Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01416 ATGGGCGAAGAAGTTAGGGTCACCGCTTCGCACAACCCAAACACCGTAAACGACGATGAGAAGCTCGAATTCGATATTTACCCTTTGAATTGTTACTATTTTGGATCCAAAGATCCTATTCCCTTCAAAGACCCCACCCTCTCTCATCGCCTTCTCAGCTATGCTGCCCGAGGAATGCGTACTTGTGTCCAGGCTGTTTTGCTGGTTGAATTGTTCAAACATCCGCATTTGTTGTTGTTGCAAGTAAGAAATTCCATCTATAGTCTCCCCGGTGGCCGATTAAGGCCAGGTGAATCAGATACTGATGGGTTGAAGCGTAAGCTGGCAAGGAAGCTTTCTGTTGAGGAAGATGGGGATGGGTTAGAATGGGAGGTGGGTGAATGCCTTGGAATGTGGTGGAGGCCTGATTTTGAAACGTTACTGTATCCTTTCTTGCCACCTAATGTAAAACAGCCCAAGGAGTGTACGAAAGTCTTCCTTGTGAAGCTGCCAGCCAGTCGAAAGTTCATTGTGCCGAAGAACATGAGGTTGCTTGCAGTCCCATTGTGCCAAGTTCATGAAAATCACAAGGTACAGACTAAGAAAATCTGTTTGTATGAAAAGTCTATAGGCTGTTCTGATAAGTGA 627 0.4561 MGEEVRVTASHNPNTVNDDEKLEFDIYPLNCYYFGSKDPIPFKDPTLSHRLLSYAARGMRTCVQAVLLVELFKHPHLLLLQVRNSIYSLPGGRLRPGESDTDGLKRKLARKLSVEEDGDGLEWEVGECLGMWWRPDFETLLYPFLPPNVKQPKECTKVFLVKLPASRKFIVPKNMRLLAVPLCQVHENHKVQTKKICLYEKSIGCSDK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01416 208 Pfam Nucleotide hydrolase 24 197 IPR016706 GO:0003729|GO:0005849|GO:0006378
Cca08g01416 208 PIRSF CPSF-25 2 197 IPR016706 GO:0003729|GO:0005849|GO:0006378
Cca08g01416 208 SUPERFAMILY Nudix 59 132 IPR015797 -
Cca08g01416 208 PANTHER PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT 7 193 IPR016706 GO:0003729|GO:0005849|GO:0006378
Cca08g01416 208 PANTHER PRE-MRNA CLEAVAGE FACTOR IM 25 KDA SUBUNIT 1 7 193 - -
Cca08g01416 208 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 23 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01416 Cca-Chr8 42315416 42319842 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01416 K14397 - gmx:100791216 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01416 08 42315416 42319842 Cca08g01416 08 42315416 42319842 ECH