Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01414 ATGCCCCACCGTCGCTCTTCGCCACCCCTCCTCAGCCCTCCGCTGCTCATCATTCTCTTCCCCATCGTCACGCTCACGCTCCTCTTCCTcgccctgccgccgctcctggccgccgccacccgcctcctccgccccgcctccgtcgTCAAGACCAGCTGGGACTCCCTCAACATCCTCCTCGTCGTCTGCGCCATCCTCTGCGGCGTCTTCGCAAGACGAAACCACGACGAGCCCCCTCCCGATCCAAACGCTGCGTTTCGCCCTCTCCCTTCTTCCCAAGGACAATCACAATGGTTCGGCTTTCAGGAAGAGACAAAGCTCTACGATAATCATAATCATAATGAGGCTTCGCTTACTCGGTTGGACTCACCGGCTACCGCCTTTAACCGCTTCAGAGGCACAAGAAGCAGCAGCTCTTATCCAGATCTGCGCCACTGGGATACCGGCGACCACCGTTACAAGTCCCGCTTCTTCGATGATTACGAAATCCACAAGCAGTTCCGCTCTCCTGCCAGGGACCACCCCCCCGCCGTCAACCACCGCCAACGCTTGCTGGAATCTCCACCGCCGCCGCCGCaaccacaacgtgaacagcaacgagaacgagaaGATCGAGTTAAGGAAATTCCAGTGGACACCTTCGAAGTCCGTCCTTCTccgccgccgccgaagtcacctgctccgcctcctccgccaccgcctcctcctccgccgGAATCTTCCCGTCGCGATTCTCGACGGACGCATCGGAAAATAGAGAGAGAGAGTGAGATAACTGTCGAACTCGACGACCGCGTGTTCACGCCGGCGGCGGctcctcctcctacgccgcctcctccgcctTCGGTAAAGACACGATCGGAGCGAAAGAAGAGCAACGTGAAGAGAGAGATAGCAATGGTTTGGGCTTCGGTTCTCTCCAATCAGCGAAAGAAAAAGAAGAAACAGAGAGCAAAGAATAATCACAATCACGATTACGATGATAATGTTGACGAATTACCAAATAACACGACGTTAccaccgtcaacaccgccgccgcctccacctccgcctccgccTTCAGTTTTCCACACCTTATTCCGCAAAGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTCGCCGCCGCCTCCACCTCCGCCTCCGCCTTCAGTTTTCCACACCTTATTCCGCAATGGACTAGGCAAGAGCAAGAAAATCCACTCGGTGTcgccgccgcctccacctcctcctccgccgccgTCAAAACGAAAAAACCGAATCCCTCCGCCGCCGCCGTCTCCTCCTCCGGAGCCTCCTCGGCGGCGAAACTCCGGGAGACCGCCGCTGCCTAACAGAACCATCCACTTAAACTACGACACAACAAACGCCGGCAACCAGTCGCCGCTGATTCCCGTTccgccgccgccgccgccgTTTAAAGTAAACGCGATGAGGTTCGTAGTTCGCGGAGATTTCGTTAAGATACGTAGCAACCAAAGCTCACGGTGTAGCTCTCCAGAACGCGACGACGTTAATGCGTCGGAAGCCACAATGAGTGACGCTGTTAGTGACGGCGTTAATAACGGCGTTACGGATCGTAACGTTTTCTGTCCCAGCCCCGATGTGAACGTTAAGGCCGCAACGTTCATTGCTCGGCTTAGGGGAGAGTGGAGGCTTGAAAAACTCAACTCCTTGAAGGAGAAAGTTATTAGAGCCTGCTAA 2784 0.5014 MPHRRSSPPLLSPPLLIILFPIVTLTLLFLALPPLLAAATRLLRPASVVKTSWDSLNILLVVCAILCGVFARRNHDEPPPDPNAAFRPLPSSQGQSQWFGFQEETKLYDNHNHNEASLTRLDSPATAFNRFRGTRSSSSYPDLRHWDTGDHRYKSRFFDDYEIHKQFRSPARDHPPAVNHRQRLLESPPPPPQPQREQQREREDRVKEIPVDTFEVRPSPPPPKSPAPPPPPPPPPPPESSRRDSRRTHRKIERESEITVELDDRVFTPAAAPPPTPPPPPSVKTRSERKKSNVKREIAMVWASVLSNQRKKKKKQRAKNNHNHDYDDNVDELPNNTTLPPSTPPPPPPPPPPSVFHTLFRKGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPSVFHTLFRNGLGKSKKIHSVSPPPPPPPPPPSKRKNRIPPPPPSPPPEPPRRRNSGRPPLPNRTIHLNYDTTNAGNQSPLIPVPPPPPPFKVNAMRFVVRGDFVKIRSNQSSRCSSPERDDVNASEATMSDAVSDGVNNGVTDRNVFCPSPDVNVKAATFIARLRGEWRLEKLNSLKEKVIRAC 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 525 554 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 525 554 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 762 799 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 612 626 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 215 239 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 522 536 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 402 416 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 167 828 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 732 746 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 3 378 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 615 644 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 705 739 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 240 262 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 675 704 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 435 467 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 735 922 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 615 644 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 375 407 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 702 716 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 582 596 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 645 674 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 375 407 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 495 524 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 196 212 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 432 446 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 672 686 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 405 437 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 555 584 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 465 494 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 552 566 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 3 378 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 465 494 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 462 476 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 585 614 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 675 704 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 735 922 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 585 614 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 642 656 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 338 356 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 492 506 - -
Cca08g01414 927 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 435 467 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 405 437 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 645 674 - -
Cca08g01414 927 MobiDBLite consensus disorder prediction 372 386 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 555 584 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 705 739 - -
Cca08g01414 927 PANTHER COTTON FIBER (DUF761) 495 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01414 Cca-Chr8 42259986 42262919 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01414 - - gmx:100804824 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01414 08 42259986 42262919 Cca08g01414 08 42259986 42262919 ECH