Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01391 ATGGCGTCCGTGTACATTCCGGTGCAGAATTCGGAGGAGGAGGTTAGGGTTGCTCTCGATCAGCTTCCGAGAGACGCTTCCGACATCCTCGACATCCTCAAGGCCGAACAAGCCCCTCTCGATCTCTGGCTCATCATTGCGAGGGAGTACTTCAAGCAGGGAAAAATTGATCAATTTCGCCAGATTTTGGAGGAAGGATCCAGTCCAGAAATCGATGACTATTATGCTGATGTCAGATATGAGAGGATTGCTATCTTAAATGCCCTTGGAGCTTACTACAGCTACCTTGGAAAAATAGAGACAAAACAAAGAGAAAAGGAGGATCATTTCATTTTGGCAACACAATATTACAACAAAGCATCTAGGATTGACATGCACGAGCCCTCCACTTGGGTTGGCAAAGGTCAGCTTTTGCTAGCAAAGGGTGAAGTAGAACAGGCATCTGCTGCATTTAAGATTGTGTTAGATGGAGACCGTGATAATGTGCCCGCTCTTTTGGGGCAGGCATGTGTTGAGTTCAACCGCGGACGATTTTCTGATTCACTTGAGTTGTATAAGAGAGCATTGCAAGTGTATCCCAATTGCCCAGCAGCTGTGAGACTTGGCATAGGTCTATGTCGCTACAAATTAGGTCAATTTGAAAAGGCTAAACAGGCATTTGAGCGTGTTTTACAGCTAGATCCAGAAAATGTCGAAGCTCTTGTTGCCCTTGCAATAATGGACTTGCGTACTAGTGAAGCTACTGGAATCAGGATGGGAATGGTAAAAATGCAGAAGGCATTTGAGATATACCCGTACTGTGCGATGGCTCTGAATTATCTTGCGAATCATTTCTTCTTCACTGCCCGCTCGTATCATAGCAAGGCGCTTGGGCATATATATGTTCAACTTGGTCAAACTGACAAGGGCCAGGACTTTATTAGGAGAGCTACAAAAATTGACCCCCGTGATGCCCAGGCATTTCTTGAGCTGGGAGAATTGTTAATTCTTTCCGACACAGGAGCTGCATTGGATGCATTCAAAACTGCTCGTACACTTTTTAAGAAGGGAGGTCAAGAAGTACCGATTGAATTACTCAATAATATTGGTGTCCTTCAGTTTGAAAGGGGGGAATTTGAGCTTGCTCAACAAACTTTCAAGGAGGCTCTAGGTGATGGCATTTGGCTATCTTTCACTtcctttttgtcacctttactacttaagatgagttatacttatgagtttgagataacttga 1236 0.4264 MASVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIAILNALGAYYSYLGKIETKQREKEDHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQASAAFKIVLDGDRDNVPALLGQACVEFNRGRFSDSLELYKRALQVYPNCPAAVRLGIGLCRYKLGQFEKAKQAFERVLQLDPENVEALVALAIMDLRTSEATGIRMGMVKMQKAFEIYPYCAMALNYLANHFFFTARSYHSKALGHIYVQLGQTDKGQDFIRRATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQEVPIELLNNIGVLQFERGEFELAQQTFKEALGDGIWLSFTSFLSPLLLKMSYTYEFEIT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01391 411 Gene3D Tetratricopeptide repeat domain 254 386 IPR011990 GO:0005515
Cca08g01391 411 ProSiteProfiles TPR repeat profile. 284 317 IPR019734 GO:0005515
Cca08g01391 411 Pfam Tetratricopeptide repeat 200 230 IPR001440 GO:0005515
Cca08g01391 411 Gene3D Tetratricopeptide repeat domain 24 158 IPR011990 GO:0005515
Cca08g01391 411 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Cca08g01391 411 SUPERFAMILY TPR-like 204 383 IPR011990 GO:0005515
Cca08g01391 411 SMART tpr_5 162 195 IPR019734 GO:0005515
Cca08g01391 411 SMART tpr_5 128 161 IPR019734 GO:0005515
Cca08g01391 411 SMART tpr_5 356 385 IPR019734 GO:0005515
Cca08g01391 411 SMART tpr_5 197 230 IPR019734 GO:0005515
Cca08g01391 411 SMART tpr_5 284 317 IPR019734 GO:0005515
Cca08g01391 411 ProSiteProfiles TPR repeat region circular profile. 197 230 - -
Cca08g01391 411 Gene3D Tetratricopeptide repeat domain 159 248 IPR011990 GO:0005515
Cca08g01391 411 Pfam Tetratricopeptide repeat 290 316 IPR019734 GO:0005515
Cca08g01391 411 Pfam Tetratricopeptide repeat 134 194 - -
Cca08g01391 411 SUPERFAMILY TPR-like 107 279 IPR011990 GO:0005515
Cca08g01391 411 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 288 390 IPR031101 GO:0006355|GO:0016570
Cca08g01391 411 PANTHER RNA POLYMERASE-ASSOCIATED PROTEIN CTR9 1 284 IPR031101 GO:0006355|GO:0016570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01391 Cca-Chr8 41630507 41638511 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01391 K15176 - gmx:100794371 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01391 08 41630507 41638511 Cca08g01391 08 41630507 41638511 ECH