Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01381 ATGGTGGCCATGGGCGGCACAACGAACAGAACAATCGAAACATTCGAAGAGTTCGCCAAAGTTCACGCGCTGCTACTTGCGGCGTCGGGGTTGCCGGAGCGACTGCACCGCCGCCTCTTCGAGAAGCTCTCCGGCGAGTCCTTCGACGGCGGCGACCACTTCCAGATCGAGCCGTGCGAGGATGGCCGTCAGAGGCGCCTCCTTCTCACCTCCGAATCGATGCCGAGGGACTCCGACGTCTTCCTCGTCGATCACGCCTGGACTTTCCGACTCTCCGACGCCTACAAGCAGCTGCACGAGGTTCCAGGATTGGCCGAGAGGATGGGTTCTATGATGTGTTTGGATGTTGATGTGAATTCGGATGGTGAAGCTGAAGTGAATGGTGAGCGTACTGTTGTGGAAATTCTGGAGAGTGATGTTCGAGAGGCAAAGGAGAAAGGAGACGGCACGGTGAGGTGGTTGGAGCTTGAGGGGCTTCACATTGATGATGACATGCTTCAGTCTCTCTCCTTACCAACTAGGTTTCCGGATTTGGTGGCACTTAGCTTGCTTGGAAATGAGCTCAATAATGCTGAACTGGTTGTTCAAGAAGTTATCAAATTTAAGCATCTTAAAGGAATTTGGCTCAACAATAACCCGGTTCTTAAAAATGGTGATGGGGAGCTTGCAGATGTGATTATTAAGGAGTTGCCAGAACTGGAAATTTATAATTCAAGTTTCACAAGCAATTTTGGGGAATGGGCCTTGGGCTTTTGTGCAGGGATATACGGAAAGGATAACCCTGGGAATTCTGATCAGGCTGACATCCCACTGCACAGTGTGTCTTCTCTTGACCTTTCAAATAGAAACATTCACAATTTAATCAAGAAGGCATTTTCACCCACTTGTTTGCCATCTCTTTCATGCTTGAACATTCATGGAAATCCATTGGAGCAAAACTCATTTGCTGGCTTGGTAGATCTGCTGAGGAGATTCCCATGCTTATGTTCATTGGAGGTGGATATTCCTGGTCCACTTGGAGAAAGTGCCATTGAAATTCTAGAATCTCTTCCGAACATTTCTGCGCTAAATGGTATCAGTGCAATCAAAATATTGGAAACTGGAAAGCATGTTATTGATTCACTGCTTCTTCCTCGTCTTCCTGAATGGACTCCTGATGAGCCTCTTGCTGACCGTATTATAAATGCAATGTGGCAATATCTAATGACATATAGACTTGCAGATGAAGAAAAGTTAGATGAAACATCTGTATGGTATGTGATGGATGAACTAGGTTCAGCTTTGCGGCATAGTGATGAGCCAAATTTCAGAGTGGCACCTTTTCTGTTCATGCCAGAGGGCAATCTAGCATCAGCTGTGAGCTTTTCTATTCTATGGCCAACAAAAAATGTTCAGAAAGGTGATGAGTGCACACGCGATTTTCTTCTTGGTATTGGAGAGGATAAACAACATTCTGCCAGGCTTACTGCCTGGTTCCACACTCCAGAGAACTATTTTATCCATGCATATGAGAAGCACAATCAGACATTGCTATCCACAAATTTAATATCTCCCACTATGCAGTCTTCGGAGACTAGAAGTATTCGTCAACCTGATGGGCGTCCTTTACGTGTTTACACAGATATACCTCATGTAGAGGAATATTTGACTCATCCTGAGTTTGTAATCACAAAGGAACCAAAAGATGCAGATATAATATGGACAAGTGTGCAGGTAGATGAGGATATGAAGAAGGCCACAGGAATTACGGACCAGCAATACATTAATCAATTTCCGTTTGAGGCGTGTCTTGTTATGAAGCATCATTTAGCAGAGACAATTCAGAAGGCATATGGATCTCCTCAATGGTTGCAGCCTACTTACAATCTTGAAACACACCTATCTCAACTTATTGGTGACTATTGTGTACGCAAAAAGGAAGGACTTGACAATCTTTGGATCTTAAAACCTTGGAACATGGCCCGGACTATTGATACTACTGTAACTGATAATTTGCCTGCAATAATCCGGCTCATGGAAACTGGTCCCAAGATTTGCCAGAAGTATATTGAACAACCTGCTTTGTTCCAGGGGAAAAAGTTTGATCTCCGTTACATAGTACTGGTTCGGAGCATGCACCCTCTGGAGATATTCCTGTCAGATTGTTTCTGGGTTAGGATAGCCAACAACCAATATTCTTTAGACAGAAGTAGTTTCTTTGAATATGAAACTCACTTCACTGTTATGAATTATCGCGGAAGAATAAATCATAAGAAAGTTAACGATTTTGTGAGGGAATTTGAGGAAGAACACCAAGTTAAATGGTTGGATATACACACAAGAGTAAGAAATATGATTCGATCAGTGTTTGAGGCAGCTGCGGTTGCTCATCCTGAGATGCATAGTCCAACATCAAGGGCAATGTATGGTTTAGATGTCATGTTGGACAGCTCTTTCCAACCTAAGTTACTAGAGGTGACTTATTGCCCGGATTGTACAAGAGCTTGCAAGTATGACATGGATATTGTGGTCGGAGAGGGAGGCGTCGCCAAAGGTTGTGATTTCTTCAATAATGTGTTTAGGTGTCTCTTTTTGAATGAAATTTCACAGGTTAGCCCATTGTAA 2604 0.4382 MVAMGGTTNRTIETFEEFAKVHALLLAASGLPERLHRRLFEKLSGESFDGGDHFQIEPCEDGRQRRLLLTSESMPRDSDVFLVDHAWTFRLSDAYKQLHEVPGLAERMGSMMCLDVDVNSDGEAEVNGERTVVEILESDVREAKEKGDGTVRWLELEGLHIDDDMLQSLSLPTRFPDLVALSLLGNELNNAELVVQEVIKFKHLKGIWLNNNPVLKNGDGELADVIIKELPELEIYNSSFTSNFGEWALGFCAGIYGKDNPGNSDQADIPLHSVSSLDLSNRNIHNLIKKAFSPTCLPSLSCLNIHGNPLEQNSFAGLVDLLRRFPCLCSLEVDIPGPLGESAIEILESLPNISALNGISAIKILETGKHVIDSLLLPRLPEWTPDEPLADRIINAMWQYLMTYRLADEEKLDETSVWYVMDELGSALRHSDEPNFRVAPFLFMPEGNLASAVSFSILWPTKNVQKGDECTRDFLLGIGEDKQHSARLTAWFHTPENYFIHAYEKHNQTLLSTNLISPTMQSSETRSIRQPDGRPLRVYTDIPHVEEYLTHPEFVITKEPKDADIIWTSVQVDEDMKKATGITDQQYINQFPFEACLVMKHHLAETIQKAYGSPQWLQPTYNLETHLSQLIGDYCVRKKEGLDNLWILKPWNMARTIDTTVTDNLPAIIRLMETGPKICQKYIEQPALFQGKKFDLRYIVLVRSMHPLEIFLSDCFWVRIANNQYSLDRSSFFEYETHFTVMNYRGRINHKKVNDFVREFEEEHQVKWLDIHTRVRNMIRSVFEAAAVAHPEMHSPTSRAMYGLDVMLDSSFQPKLLEVTYCPDCTRACKYDMDIVVGEGGVAKGCDFFNNVFRCLFLNEISQVSPL 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01381 867 SUPERFAMILY RNI-like 153 357 - -
Cca08g01381 867 Pfam Tubulin-tyrosine ligase family 585 835 IPR004344 GO:0036211
Cca08g01381 867 Gene3D - 661 840 - -
Cca08g01381 867 ProSiteProfiles TTL domain profile. 531 867 IPR004344 GO:0036211
Cca08g01381 867 PANTHER TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 9 866 IPR027749 -
Cca08g01381 867 Gene3D Ribonuclease Inhibitor 135 369 IPR032675 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01381 K16609 - gmx:100809212 1584.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01381 08 41451966 41458550 Cca08g01381 08 41451966 41458550 ECH