Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca08g01375 | ATGGCGCGGTTGTGTGTGGCGTGGTGCTCGGTGGCGGTGCTAGTGTGCGCGGCGGCGGTTGGTGCGTCGAATGCGTTGACTTTTGCGAGGTTCGTTGATAGGTTCGGGAAGAGGTACCGAAGCGCGGAAGAGATGAAGGAGAGGTTCGAGATTTTCAAGCAAAACCTGAAGTTCATCCGCTCCGCCAACAAGAAGCGCTTGCCCTACACTCTCGCTGTTAATCATTTTGCTGATTGGAGTTGGGAGGAGTTCAAAACACACAGACTAGGCGCTGCCCAAAATTGCTCTGCTACTCATAAGGGCAACCACAAGCTTACCGATGCTGTTCTTCCTCCCACGAAAGACTGGAGAAAACATGGTATAGTGAGTGCAGTTAAAGATCAGGGCAGCTGTGGATCATGCTGGACATTCAGCACAACTGGGGCTTTAGAAGCAGCCTATGCACAGGCATTTGGGAAGAGTGTGTCTCTTTCTGAGCAGCAGCTAGTGGATTGTGCTGGTCGTTTCAATAACTTTGGCTGTAATGGTGGGTTGCCATCACAAGCCTTTGAGTACATTAAATACAATGGTGGACTTGAAACAGAAGAAGCATATCCCTACACTGGAGAAGATGGTGTCTGCAAATTCTCTGCTGAAAATGTTGCTGTTCAAGTCCTTGACTCTGTCAATATCACCTTGGGTGCTGAGGATGAATTGAAGCATGCAGTTGCATTTGTTAGGCCAGTTAGTGTCGCTTTCCAAGTGGTTAACGGTTTCCGATTCTACCAGAACGGAGTTTACTCTAGCAACACTTGTGGTAGCACTTCCCAGGATGTGAACCATGCCGTTCTTGCTGTTGGGTATGGAGTTGAAAATGGTGTCCCATATTGGCTCATTAAAAATTCATGGGGAGAAAGCTGGGGTGACAATGGCTACTTCAAGATGGAACTGGGGAAGAACATGTGTGGTGTTGCAACTTGTGCGTCTTATCCGGTTGTGGCTTAA | 984 | 0.4837 | MARLCVAWCSVAVLVCAAAVGASNALTFARFVDRFGKRYRSAEEMKERFEIFKQNLKFIRSANKKRLPYTLAVNHFADWSWEEFKTHRLGAAQNCSATHKGNHKLTDAVLPPTKDWRKHGIVSAVKDQGSCGSCWTFSTTGALEAAYAQAFGKSVSLSEQQLVDCAGRFNNFGCNGGLPSQAFEYIKYNGGLETEEAYPYTGEDGVCKFSAENVAVQVLDSVNITLGAEDELKHAVAFVRPVSVAFQVVNGFRFYQNGVYSSNTCGSTSQDVNHAVLAVGYGVENGVPYWLIKNSWGESWGDNGYFKMELGKNMCGVATCASYPVVA | 327 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca08g01375 | 327 | CDD | Peptidase_C1A | 111 | 324 | IPR039417 | - | |
| Cca08g01375 | 327 | ProSitePatterns | Eukaryotic thiol (cysteine) proteases cysteine active site. | 128 | 139 | IPR000169 | - | |
| Cca08g01375 | 327 | PANTHER | THIOL PROTEASE ALEURAIN | 22 | 324 | - | - | |
| Cca08g01375 | 327 | Pfam | Papain family cysteine protease | 110 | 325 | IPR000668 | GO:0006508|GO:0008234 | |
| Cca08g01375 | 327 | Gene3D | Cysteine proteinases | 19 | 326 | - | - | |
| Cca08g01375 | 327 | SUPERFAMILY | Cysteine proteinases | 23 | 325 | IPR038765 | - | |
| Cca08g01375 | 327 | SMART | pept_c1 | 110 | 325 | IPR000668 | GO:0006508|GO:0008234 | |
| Cca08g01375 | 327 | PRINTS | Papain cysteine protease (C1) family signature | 128 | 143 | IPR000668 | GO:0006508|GO:0008234 | |
| Cca08g01375 | 327 | PRINTS | Papain cysteine protease (C1) family signature | 274 | 284 | IPR000668 | GO:0006508|GO:0008234 | |
| Cca08g01375 | 327 | PRINTS | Papain cysteine protease (C1) family signature | 289 | 295 | IPR000668 | GO:0006508|GO:0008234 | |
| Cca08g01375 | 327 | SMART | Inhibitor_I29_2 | 28 | 84 | IPR013201 | - | |
| Cca08g01375 | 327 | Pfam | Cathepsin propeptide inhibitor domain (I29) | 28 | 84 | IPR013201 | - | |
| Cca08g01375 | 327 | ProSitePatterns | Eukaryotic thiol (cysteine) proteases histidine active site. | 272 | 282 | IPR025660 | - | |
| Cca08g01375 | 327 | PANTHER | CYSTEINE PROTEASE FAMILY C1-RELATED | 22 | 324 | - | - | |
| Cca08g01375 | 327 | ProSitePatterns | Eukaryotic thiol (cysteine) proteases asparagine active site. | 289 | 308 | IPR025661 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca08g01375 | Cca-Chr8 | 41400420 | 41410319 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca08g01375 | K01366 | - | gmx:547734 | 584.334 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca08g01375 | 08 | 41400420 | 41410319 | Cca08g01375 | 08 | 41400420 | 41410319 | ECH |