Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01338 ATGAGAACGGCGTCGTTCGGGAGGTGCAGCGCCGGAGAGCTCGAAGTGCCGGAAAGCTGCGGCACTTCGTCGCCGGCGGCCGGAGGACACGCCTACGGCGCCATGCTGCCGGTGTTCCTGAACGACCTGCGGAGCAACCACCACAAGGAGCTCGTGGAGATCACGCTGGAGCTGGAAAACGACGCCGTGGTGCTCTGCAACGTGGCGCCGGCGCCGTCTTTGGCTCCGAACGCGTCGCCGTCGTCGAGCGGTGAGGGAGGCGGCGGAGCGGTGGTGGCGAGGAGCCTCTCGATCACGTCGAGGATTCGGAGGAAGAAGTTCCCGTGGCTGCGGTCGGTGTCGTCGGCGTCGTCGGCGGAGAGTGCCGCTGCCGCCGTGGCCGTGGAAGATCCGGTGGCGACGGCGCGAAACGCGCGGAAAATGAGAGCGAAGCTGGAGCGCACGAGGTCGAGCGCGCAGCGAGCGCTGAAAGGCTTGAGGTTCATCAGCAAGTCCGGCGAAGCCAGCGAGGAGTTGTGGCGAAAGGTGGAAGAGAGGTTCACCTTGTTGGCCAAGGATGGCTTACTCGCTCGTGAAGACTTTGGTCAATGCATAGGGATGGAGGATTCGAAGGAATTTGCGGTGTGTATATTCGACGCATTGGCACGAAGGAAGGAAAGGAAAGTGAGTAGCATAAACAGAGAAGAGTTGCATGAGTTCTGGTTGCAAATTTCGGACCAGAGTTTTGATGCTCGCCTTCAGATTTTCTTTGACATGGCAGACAGTAACGAAGATGGAAGAATTACTAGGGAGGAAGTACAAGAGCTCATAATGCTCAGTGCTTCCGCGAACAAGCTAGCTAAGCTAAAGGAACAAGCTGAAGGATACGCCGCGCTAATAATGGAAGAATTAGATCCAGAAAACCTGGGGTATATCGAGTTGTGGCAACTAGAAATGTTGTTACTAGAAAAGGATAGGTACATGAACTACAGCAGACAACTCAGCAGTGCAAGTGTAAATTGGAGTCAAAATATGACGGACTTGAGGCCCAAAAATGAAATCCAAAGATTTTACAGGGCACTCCAATGTCTTGCATTGGAGTATTGGAGAAGGGGTTGGGTTTTGATATTATGGCTGGTTATCACTACTTGCCTTTTTGCCTGGAAATTCTACCAATATAAAAATAAATCAACTTTTCAAGTTATGAGCTATTGCATACCAGTAGCTAAAGGTGCTGCAGAGACACTGAAGCTCAACATGGCTCTCATCCTCTTACCAGTTTGTCGAAATACGTTGACATGGCTTCGTTCTACCAGAGCTAGAAAGTTTGTCCCTTTTGATGACAATATTAATTTCCACAAGATGATTGCATTTGCCATACTTGTTGGAGTTGTTGTTCATGCTGGCAATCATCTGGCATGTGATTTCCCTCTTCTCGTAAACTCATCTCCAGAGAAGTTTTCGATTATATCTTCAGATTTTAATGACAAAAAACCCACATATAAATCACTTTACATTAGTGTGGAAGGCATGACTGGAATCTCAATGGTTATTTTGATGATAATCTCTTTCACTTTAGCAACTCACCACTTCCGGAGAAATGCAGTGAAGCTTCCGTCACCCTTTAACAGATTGACAGGCTTTAATTCATTCTGGTACTCACACCATCTTTTTGGTTTGGTCTATGTTCTACTCCTCATCCATGGGTCATTTTTGCATTTAACCCACCGTTGGTACCATAAAACAACATGGATGTATATCTCTGTTCCACTGTTGCTTTACGTTGCAGAGCGTACTCTACGCACTCGTAGATCAACACATTATACTGTGAAAATTATGAAGGTTTCAAGGTTGCCCGGAAATGTCTTCAGCTTAATCATGTCCAAGCCTAATGGATTTAAGTACAAAAGTGGACAATATATATTTTTACAATGTCCAAAAATTTCTCCCTTTGAATGGCACCCATTTTCCATTACCTCGGCCCCAGGAGATGAGTACCTAAGTGTTCACATTCGCATAGTGGGAGACTGGACCCAAGAACTTAAGCTTCTTCTCACAAAAGAAGATGAGAGATTACCTTCACTTAATTGTCGTGCAACATTTGGTGAACTAATGGAACTGGATCAAACAAGACAACCGAGACTTCTAGTTGATGGTCCTTATGGAGCTCCAGCACAAGACTACCAAAATTTTGATGTAATGCTCCTCATAGGATTAGGAATTGGAGCAACTCCTTTCATTAGCATTATCAGAGATCTCCTCAATAACACAAGAACAACGGATGAACTAGTGGTGCAGGAATCAAACACAGAAACAAGTCAAACAACTAGATCAGACGAAAGCTCTAATAGTTTTACATCTTCAAATTTAACACCAGGAGGAAATAAGATATTAAGAAGGACTACAAATGCTTATTTCTACTGGGTCACTAGGGAACCTGGATCTTTTGAATGGTTCAAAGGAGTAATGGACGAAGTTGCTGAAATGGACCACAAAGGTCAAATTGAGCTTCACAACTATCTTACAAGTGTCTATGAAGAGGGGGATGCGAGATCAACCTTAATCACCATGATCCAAGCTTTGAACCATGCCAAAACTGGTGTTGATATCCTATCAGGCACTCGAGTAAGGACACACTTTGCTAGGCCTAATTGGAGAGAGGTTTTCACCAAGATTGCCTCTAAACATCCATTTTCTACAATAGGTGTGTTCTATTGCGGGATGCCAATGTTGGCGAAGGAGCTAAAGAAGCTATCACTTGAGCTAAGTCACAAGACAACTACACGCTTTGAATTTCACAAGGAGTACTTTTGA 2793 0.4569 MRTASFGRCSAGELEVPESCGTSSPAAGGHAYGAMLPVFLNDLRSNHHKELVEITLELENDAVVLCNVAPAPSLAPNASPSSSGEGGGGAVVARSLSITSRIRRKKFPWLRSVSSASSAESAAAAVAVEDPVATARNARKMRAKLERTRSSAQRALKGLRFISKSGEASEELWRKVEERFTLLAKDGLLAREDFGQCIGMEDSKEFAVCIFDALARRKERKVSSINREELHEFWLQISDQSFDARLQIFFDMADSNEDGRITREEVQELIMLSASANKLAKLKEQAEGYAALIMEELDPENLGYIELWQLEMLLLEKDRYMNYSRQLSSASVNWSQNMTDLRPKNEIQRFYRALQCLALEYWRRGWVLILWLVITTCLFAWKFYQYKNKSTFQVMSYCIPVAKGAAETLKLNMALILLPVCRNTLTWLRSTRARKFVPFDDNINFHKMIAFAILVGVVVHAGNHLACDFPLLVNSSPEKFSIISSDFNDKKPTYKSLYISVEGMTGISMVILMIISFTLATHHFRRNAVKLPSPFNRLTGFNSFWYSHHLFGLVYVLLLIHGSFLHLTHRWYHKTTWMYISVPLLLYVAERTLRTRRSTHYTVKIMKVSRLPGNVFSLIMSKPNGFKYKSGQYIFLQCPKISPFEWHPFSITSAPGDEYLSVHIRIVGDWTQELKLLLTKEDERLPSLNCRATFGELMELDQTRQPRLLVDGPYGAPAQDYQNFDVMLLIGLGIGATPFISIIRDLLNNTRTTDELVVQESNTETSQTTRSDESSNSFTSSNLTPGGNKILRRTTNAYFYWVTREPGSFEWFKGVMDEVAEMDHKGQIELHNYLTSVYEEGDARSTLITMIQALNHAKTGVDILSGTRVRTHFARPNWREVFTKIASKHPFSTIGVFYCGMPMLAKELKKLSLELSHKTTTRFEFHKEYF 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01338 930 CDD EFh 224 271 IPR002048 GO:0005509
Cca08g01338 930 Gene3D - 715 930 IPR039261 -
Cca08g01338 930 PANTHER NADPH OXIDASE 40 930 - -
Cca08g01338 930 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 598 720 IPR017927 GO:0016491
Cca08g01338 930 SUPERFAMILY EF-hand 161 325 IPR011992 -
Cca08g01338 930 Pfam Respiratory burst NADPH oxidase 144 244 IPR013623 GO:0004601|GO:0050664
Cca08g01338 930 ProSiteProfiles EF-hand calcium-binding domain profile. 241 276 IPR002048 GO:0005509
Cca08g01338 930 Coils Coil 135 155 - -
Cca08g01338 930 PANTHER RESPIRATORY BURST OXIDASE HOMOLOG PROTEIN E 40 930 - -
Cca08g01338 930 Pfam Ferric reductase like transmembrane component 404 559 IPR013130 -
Cca08g01338 930 SUPERFAMILY Riboflavin synthase domain-like 600 717 IPR017938 -
Cca08g01338 930 ProSitePatterns EF-hand calcium-binding domain. 254 266 IPR018247 -
Cca08g01338 930 MobiDBLite consensus disorder prediction 757 787 - -
Cca08g01338 930 CDD NOX_Duox_like_FAD_NADP 605 872 - -
Cca08g01338 930 Gene3D Translation factors 587 685 - -
Cca08g01338 930 Pfam Ferric reductase NAD binding domain 724 912 IPR013121 GO:0016491
Cca08g01338 930 SFLD NADPH oxidase subgroup (NOX) 137 930 - -
Cca08g01338 930 Gene3D - 145 262 - -
Cca08g01338 930 Pfam FAD-binding domain 602 717 IPR013112 GO:0016491
Cca08g01338 930 MobiDBLite consensus disorder prediction 1 22 - -
Cca08g01338 930 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 723 930 IPR039261 -
Cca08g01338 930 PRINTS Cytochrome B-245 heavy chain signature 504 527 IPR000778 GO:0016020|GO:0016491
Cca08g01338 930 PRINTS Cytochrome B-245 heavy chain signature 706 719 IPR000778 GO:0016020|GO:0016491
Cca08g01338 930 PRINTS Cytochrome B-245 heavy chain signature 729 746 IPR000778 GO:0016020|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01338 Cca-Chr8 40348308 40359708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01338 23 930 Miscellaneous Gene Families AT1G19230 61.587 0.0 1162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01338 K13447 - gmx:100805697 1624.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01338 08 40348308 40359708 Cca08g01338 08 40348308 40359708 ECH