Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01331 ATGGCAAAACAAAATTTTCCCCTGGGTCGTTCTGTTGCTTGTTTAACATTAATTCAGTTCATAGCTTTTACGAGTTTCAGCACATCACAAAGCCACGTAGACGAGACTTCAAGTACCACCACTAAGGCCTTTTTCATCTTTGGCGACTCCACCGTAGATTCTGGCAACAACAATTACATAAATACCATTCCTGAGAACAAAGCAGATTACAAACCATATGGACAAAACGGTTTTTTCCAACAACCCACGGGACGATTCTCTGATGGTCGTGTCATCGTAGATTTTATAGCTGAATATGCTAAGCTGCCATTAATTCCTCCGTTTTTGCAACCAAATGCTGATTATAGTAACGGTGTGAACTTTGCTTCTGGTGGGGCCGGTGTTCTTGCTGAAACCAATCAGGGACTGGTGATTGATCTTCAGACACAATTGATCCACTTTGAAGAAGTGGAAAAATCATTATCAGAAAAGCTGGGAGAGAAGAAGGCAAAGGAATTGATCGCGGAAGCAATTTATTTCATTAGCATAGGAAGCAACGATTACATGGGTGGTTATCTGGGTAACCCAAAAATTCAAGAAAGCTACAATCCTGAACAATATGTTTGGATGGTCATTGGAAACTTGACCCGAACAATCCTAACTCTATATGAGAAAGGGGCTAGAAACTTTGGGTTCTTAAATTTGTCTCCTTTGGGTTGCTTGCCATCTCTTAGAGCCCTAAACCCGGAAGCCAACAAAGGTGGTTGTTTCGAAGCAGCTTCAGCTCTTGCTCTAGCACATAATAATGCTTTGAATCTTGTTCTCAGAAATCTCAAAGATGACCATGAAGGATTCATGTACTCTAACTCAAATTTCTATGATTGGCTTCGTGATAGGATAGATAACCCCACAAATTATGGTTTCAAGGATGGAGTTAATGCTTGTTGTGGAAGTGGACCATATGGTGGTGTCTTCACTTGCGGGGGTACAAAGAAAGTTAAAGAGTTCAGTTTATGTGACAACGTTGGAGACTATGTATGGTGGGATTCTTTCCACCCAACAGAGAAGATCCATGAGCAATTCGCTAAGGCATTATGGAATGGACCACTTTGTTCGGTAGGACCCTACAATTTAAAGAACTTATTCTCCAACAACGACGAGATGATCGAACTCACTATTGCTGATGTTGTTGATTCCCCTAAAACTCAGCAAGAACAATTTCACTATTGA 1209 0.4086 MAKQNFPLGRSVACLTLIQFIAFTSFSTSQSHVDETSSTTTKAFFIFGDSTVDSGNNNYINTIPENKADYKPYGQNGFFQQPTGRFSDGRVIVDFIAEYAKLPLIPPFLQPNADYSNGVNFASGGAGVLAETNQGLVIDLQTQLIHFEEVEKSLSEKLGEKKAKELIAEAIYFISIGSNDYMGGYLGNPKIQESYNPEQYVWMVIGNLTRTILTLYEKGARNFGFLNLSPLGCLPSLRALNPEANKGGCFEAASALALAHNNALNLVLRNLKDDHEGFMYSNSNFYDWLRDRIDNPTNYGFKDGVNACCGSGPYGGVFTCGGTKKVKEFSLCDNVGDYVWWDSFHPTEKIHEQFAKALWNGPLCSVGPYNLKNLFSNNDEMIELTIADVVDSPKTQQEQFHY 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01331 402 CDD SGNH_plant_lipase_like 43 362 IPR035669 -
Cca08g01331 402 Gene3D SGNH hydrolase 29 361 IPR036514 -
Cca08g01331 402 Pfam GDSL-like Lipase/Acylhydrolase 45 357 IPR001087 GO:0016788
Cca08g01331 402 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 32 381 - -
Cca08g01331 402 PANTHER - 32 381 - -
Cca08g01331 402 SUPERFAMILY SGNH hydrolase 44 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01331 Cca-Chr8 40064442 40066870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01331 29 361 Acyl Lipid Metabolism Gene Families AT4G10950 30.973 3.52e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01331 - - gmx:100801228 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01331 08 40064442 40066870 Cca08g01331 08 40064442 40066870 ECH