Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01310 ATGTTAGcttcttcttcgctctccttccttcattcttcattcGCAATTTCACCGCCAAATCCCAAACCCTCTCTCCCCTTTCCTTTCGCCATTGAAGCCAAAACCAGGACCCGCAGGGAAGACAGAACCGCTCGCCACACTCGCATCAGAAAGAAGGTTGAAGGGACACCGGAGAGGCCGAGGTTGTCGGTGTTCCGCTCCAACAAGCATCTCTCCGTGCAGGTCATTGATGACTCCAAGATGTGCACGCTTGCTTCCGCTTCCACCATGCACAAGGCCGTGGCTCAAGAGTTCAACTACACTTCTGGCCCTACATTGGAAGTAGCAAAGAGGATAGGTGAGATCATTGCCAAGTCTTGTTTGGAGAAGGGGATCACAAAGGTGGCCTTTGATCGAGGTGGATACCCTTACCATGGCCGTGTTCAAGCACTTGCTGAAGCAGCTCGTGAACATGGCCTAGATTTCTAA 468 0.4829 MLASSSLSFLHSSFAISPPNPKPSLPFPFAIEAKTRTRREDRTARHTRIRKKVEGTPERPRLSVFRSNKHLSVQVIDDSKMCTLASASTMHKAVAQEFNYTSGPTLEVAKRIGEIIAKSCLEKGITKVAFDRGGYPYHGRVQALAEAAREHGLDF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01310 155 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 20 155 IPR005484 GO:0003735|GO:0005840|GO:0006412
Cca08g01310 155 Gene3D - 37 155 - -
Cca08g01310 155 Pfam Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 37 155 IPR005484 GO:0003735|GO:0005840|GO:0006412
Cca08g01310 155 SUPERFAMILY Translational machinery components 38 153 - -
Cca08g01310 155 TIGRFAM L18_bact: ribosomal protein uL18 39 155 IPR004389 GO:0003735|GO:0005840|GO:0006412
Cca08g01310 155 CDD Ribosomal_L18_L5e 49 153 - -
Cca08g01310 155 Hamap 50S ribosomal protein L18 [rplR]. 37 155 IPR004389 GO:0003735|GO:0005840|GO:0006412
Cca08g01310 155 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 20 155 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01310 K02881 - gmx:100306308 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01310 08 39445454 39448705 Cca08g01310 08 39445454 39448705 ECH