Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01298 ATGCATCTTCTCGGAACACCTTGCAAAATTCCTTATGGCCAAGGATCTATTTATGGATTCTTCAGCCAAGATAATGTACAAGTTGGGGATATCATCATCAAAGATCAAGAATTTGCTGAGATTACTAGGGAAGGATCTTTGGCACTTTCAGCGCTTCCATTTGATGGCATACTTGGACTCGGATTTCAGGATACTTCAGTTGGAAAAGTCACACCAGTGTGGTATAATATGATAGAACAAGGGCACATATGTCACAAAATTTTCTCTCTTTGGCTAAATCAAGACCCAACAGAAGAGATGGGGGGTGAGATTGTCTTTGGTGGTATTGACTACAGGCATTTTAGAGGTGACCACACATATGTTCCTCTTTCTCAAAAGGGTTATTGGCTGATTGATGTGGGAGATATTCTACTTGCAAATAACTCAACAGGGTTATGTGAGAGTGGCTGTACTGCAATAGTGGACTCAGGGACATCTTTAATTGCTGGTCCAACTAGTGTTGTGACTCAAATTAACCATGCCATTGGAGCAGAAGGATATGTTAGTTTTGAGTGTAAAAACATTGTCCATAACTATGGGGATTCAATATGGGAATCCTTGATTTCCGGGTTAAATCCTGACATTTTATGCATTGACATTGGACTCTGTTCACTGGATGAATTTTATACAATAGATGATGTTATTGAAACAGTGGTACATAATCAAAGTTGGAAAGGATCACGAACAAGGGAGAGTCCCTTGTGTACTTTTTGCAATATGATTGTCCTTTGGATCCAAGTTCAGCTTAAGCAAAGCAATGTAAAGGAAAAAGTATTAAAATATGTGGATGAGCTGTGTGAGAAGCTGCCAAATCCCCCCGGACAATCATTTATAAACTGCAATAGTATTGCAACTATGCCACACATTACATTCACGATTGGAAACAAATCCTTTTCCATCTCTCCAGAACAGTATATTCTTCGAGTTGAAGAAGGCTGCTCTACTGTCTGCTATGGTGGTTTTGTTGCTATAGATGTGCCTCCCCCGCAAGGTCCCTTCTGGGTTCTTGGAACTATTTTCTTGGGGGCATATCATACAGTGTTTGATTATGACAATCTCCGAATAGGATTTGCAGAAGCTGCATAG 1125 0.4 MHLLGTPCKIPYGQGSIYGFFSQDNVQVGDIIIKDQEFAEITREGSLALSALPFDGILGLGFQDTSVGKVTPVWYNMIEQGHICHKIFSLWLNQDPTEEMGGEIVFGGIDYRHFRGDHTYVPLSQKGYWLIDVGDILLANNSTGLCESGCTAIVDSGTSLIAGPTSVVTQINHAIGAEGYVSFECKNIVHNYGDSIWESLISGLNPDILCIDIGLCSLDEFYTIDDVIETVVHNQSWKGSRTRESPLCTFCNMIVLWIQVQLKQSNVKEKVLKYVDELCEKLPNPPGQSFINCNSIATMPHITFTIGNKSFSISPEQYILRVEEGCSTVCYGGFVAIDVPPPQGPFWVLGTIFLGAYHTVFDYDNLRIGFAEAA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01298 374 PRINTS Pepsin (A1) aspartic protease family signature 102 115 IPR001461 GO:0004190|GO:0006508
Cca08g01298 374 PRINTS Pepsin (A1) aspartic protease family signature 152 163 IPR001461 GO:0004190|GO:0006508
Cca08g01298 374 PRINTS Pepsin (A1) aspartic protease family signature 347 362 IPR001461 GO:0004190|GO:0006508
Cca08g01298 374 SUPERFAMILY Acid proteases 3 373 IPR021109 -
Cca08g01298 374 PANTHER FUNGAL PROTEINASE A, ASPARTIC PROTEINASE SUPERFAMILY PROTEIN 4 374 - -
Cca08g01298 374 Pfam Saposin-like type B, region 1 246 283 IPR007856 GO:0006629
Cca08g01298 374 ProSiteProfiles Saposin B type domain profile. 180 220 IPR008139 -
Cca08g01298 374 SUPERFAMILY Saposin 182 283 IPR011001 -
Cca08g01298 374 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 152 163 IPR001969 GO:0004190|GO:0006508
Cca08g01298 374 Pfam Eukaryotic aspartyl protease 5 373 IPR033121 -
Cca08g01298 374 Gene3D Acid Proteases 109 374 IPR021109 -
Cca08g01298 374 Gene3D Acid Proteases 1 108 IPR021109 -
Cca08g01298 374 Gene3D - 180 283 - -
Cca08g01298 374 ProSiteProfiles Peptidase family A1 domain profile. 1 371 IPR033121 -
Cca08g01298 374 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 4 374 IPR001461 GO:0004190|GO:0006508
Cca08g01298 374 ProSiteProfiles Saposin B type domain profile. 244 285 IPR008139 -
Cca08g01298 374 Pfam Saposin-like type B, region 2 184 216 IPR008138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01298 Cca-Chr8 39045822 39050732 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01298 K08245 - gmx:100500551 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01298 08 39045822 39050732 Cca08g01298 08 39045822 39050732 ECH