Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01273 ATGGCCCCAGAAAATGGAGAAAAAGTAGAGGTTGGTGGTCTCAATGCATTTCCAGGGACAAAGGCAAAGAAGAATTGGGTTCTTTTGTCCCTGAGAGTGGTTGCATTTGTGGCCACTGCATCTGCAACACTTGTCATGGCTCTCAACAAACAGACCAAAAGCTTCGTGGTTGCCACCGTTGGTAGCACCCCCATAACAGCTACTATTGCAGCAAAGTTTAACCAAACTCCAGCTTTTGTGTTCTTTGTGATAGCCAATGGAAGTGCGAGTCTGCATAATTTGGTGATGATAGCAGTGGATGTATTAGGACCCCAATATGATTACAAAGGACTCCGGCTTGCATTAATTGCTATACTAGACATGATGACAATGGCTCTGGCATCAGCTGGAGATGGTGCAGCAACATTCATGTCTGAATTGGGAAGGAATGGTAATTCTCATGCAAGATGGGATAAGATCTGTGACAAATTCGAAACCTATTGCAACCGAGGTGGTGCTGCCCTTATTGTCTCTTTCATTGCCTTCATTCTCCTCCTCATTATTTCACTCATCTCCATTATCAAGCTTCTCAACCCAAATCGCATTAACCATGCTTCTTCATAA 603 0.4378 MAPENGEKVEVGGLNAFPGTKAKKNWVLLSLRVVAFVATASATLVMALNKQTKSFVVATVGSTPITATIAAKFNQTPAFVFFVIANGSASLHNLVMIAVDVLGPQYDYKGLRLALIAILDMMTMALASAGDGAATFMSELGRNGNSHARWDKICDKFETYCNRGGAALIVSFIAFILLLIISLISIIKLLNPNRINHASS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01273 200 PANTHER CASP-LIKE PROTEIN 1B2 18 193 - -
Cca08g01273 200 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 18 193 - -
Cca08g01273 200 Pfam Casparian strip membrane protein domain 23 177 IPR006702 -
Cca08g01273 200 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 29 189 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01273 Cca-Chr8 38009664 38011595 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01273 - - gmx:100792043 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01273 08 38009664 38011595 Cca08g01273 08 38009664 38011595 ECH