Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01271 ATGAACATCTTCAAGAAGAAAACCTCACCCAAAGAAGCTCTGCGGTCAAGTAAGAGGGAAATGGCTGTTGCAACCAGAGGAATTGAAAGAGAGATAGCATCGCTTCAGATGGAGGAAAAAAAATTGGTGGCAGAGATTAAAAGAGAAGCCAAAACGGGTAATGAGGCTGCCACCAGAATCTTAGCTCGTCAACTTGTTAGGTTACGTCAACAGATAACCAATTTGCAGGGAAGTCGAGCTCAGATCAGGGGTGTAGCAACTCACACACAGGCATTATATGCTAGCACTTCAATCTCTACGGGAATGAAGGGTGCAACTAAAGCAATGGTGGCAATGAATAAGCAAATGGCACCAGCAAAACAGGTTAAAGTGATTAAAGAATTCCAAAAGCAATCAGCACAATTGGACATGACGATTGAGATGATGTCAGAATCTATTGATGAAACTTTAGACAAAGATGAAGCTGAGGAAGAAACAGAAGAGCTCACTAACCAGGTTCTTGATGAGATTGGGGTGGATATTGCATCCCAGTTATCTTCTGCTCCAAAAGGTCGAATTGCTTCAAGGAATACTGAAAATGTTGCTGCTCCAAGACCACAAGAATCCCAAGATGTTGAAGATCTTGAAAAGAGATTGGCTTCTCTCCGAAGAATATAA 657 0.4186 MNIFKKKTSPKEALRSSKREMAVATRGIEREIASLQMEEKKLVAEIKREAKTGNEAATRILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSISTGMKGATKAMVAMNKQMAPAKQVKVIKEFQKQSAQLDMTIEMMSESIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIASRNTENVAAPRPQESQDVEDLEKRLASLRRI 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01271 218 MobiDBLite consensus disorder prediction 180 208 - -
Cca08g01271 218 Coils Coil 198 218 - -
Cca08g01271 218 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 2 218 IPR005024 GO:0007034
Cca08g01271 218 MobiDBLite consensus disorder prediction 181 198 - -
Cca08g01271 218 Pfam Snf7 18 185 IPR005024 GO:0007034
Cca08g01271 218 Gene3D - 4 181 - -
Cca08g01271 218 PANTHER BNAA08G30490D PROTEIN 2 218 - -
Cca08g01271 218 Coils Coil 145 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01271 Cca-Chr8 37971700 37978340 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01271 K12191 - gmx:100777179 374.4