Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01270 ATGGTCAAAACTTGGGGTCCGACTGTCCGTGCAATTCTCCATCCTAGTTTGAAATTACAGGAGTTTCTAACCATATACAATATCACCCAGGAGTTCATTACTGCTATAGAAAAAATAGGTGGGAGATTGGGATACAGCATCTGTGGCATGCTGCAATCACAGGCCAAGGCTTTTGTTGAATTTCAGCATGTATCTTGGCTCTATTACAAAGGTGTTAGTTATCGCATGGTTAACTGTGGCTTAATATTGCTCAAGATGTTGTCGGAGTACATTGATATGAACAACCTTTTGCCAACATTATCTTCAGAAGTTGTTCACCGTGTAGTAGAAATCTTAAAAGTTTTCAACAGAAGAACATGCCAACTTGTGCTTGGGGCTGGTGCTATGCAGGAGCATAAACACAACAGTCAACAACACCAACCAAGCCTTATTCTCATTGAATAG 444 0.4054 MVKTWGPTVRAILHPSLKLQEFLTIYNITQEFITAIEKIGGRLGYSICGMLQSQAKAFVEFQHVSWLYYKGVSYRMVNCGLILLKMLSEYIDMNNLLPTLSSEVVHRVVEILKVFNRRTCQLVLGAGAMQEHKHNSQQHQPSLILIE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01270 147 PANTHER VACUOLAR PROTEIN SORTING 54 9 65 IPR039745 GO:0000938|GO:0042147
Cca08g01270 147 PANTHER VACUOLAR PROTEIN SORTING 54 67 131 IPR039745 GO:0000938|GO:0042147
Cca08g01270 147 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 54, CHLOROPLASTIC 9 65 - -
Cca08g01270 147 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 54, CHLOROPLASTIC 67 131 - -
Cca08g01270 147 Pfam Vps54-like protein 73 132 IPR012501 GO:0042147
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01270 Cca-Chr8 37960791 37962760 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01270 K17600 - gmx:100777704 121.324