Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01266 ATGGAGGTGTCGTCGGAGCAATCTGGCGAAGAGGTGACACCGGAAACGCTACGGAGTCCTTCGAGTAAGAATATTCCAGAAGTTTCTAGAAGAGCTGCGAAAACCGCCGCGGAACCTGGCGGCTCGGTTTCCGCGAAGAGGAAAGTTGAACCGCGGAGCGGTTCGGGTACTGGTTCGGTTGCGGCGACGAGGAGATCGGGTTCAATAGGCGGTTCCGCGAGTGCGGTTTCTGCGCCGAGACGGAACAGCACCGGAGGATTGCTTCAGAAGGCGTCGATCTCCGATGGAAGAAGAAAAACCGGCGGCGATTCTGCCGCCGGAGCTAAGAGCGGCGCATCGTCGGCGGCGGAACCTGCTCGGAGGTCGCTCCCGGAGCTCCGGCGAATTTCTGTAGCTTCTTCGCGTGCCGGTGCTGCGGCGAAGCCGGCTGTGGCTTCTCCTGCGGGCTCGGCTTCGAGGTCTGCCGGTGGGAGTAAGGTGGAGGTTGCGAAGAAGCCGGTGAGTAAGCCGGCATTGTCGGCTTCGGTTTCGGCTTTGTCTGTTTCGAGAAGGATTAGTTCTTCTTCGGTGGATAGCACTGGGAGCAGTGGTGGTTCTGGTCGGAGGGCGGTTTCGAGGGTTTCGTCGCCGACGGTTTCGAGCGGGTTGAAGGCGGGGTCTCTGTCGACGTCGCAGGATAGGACTTCTGCGCTGTCTGGGAGGAGGAGAGGGGGGACTCCTGATAGCAGGGATTCGAGGTTTATTGTTCTTCCGCAGATTGAGATTAAGGCCAATGATGATTTGAGACTGGATCTTAGGGGACATAGAGTTCGTAGTCTCAATGCCAGTGGATTAAACTTATCCTCAAACTTAGAGTTTGTTTATCTTCGAGACAATCTCTTGTCTACATTGGAAGGAGTAGAAATATTGACGAGAGTGAAGGTTCTTGATTTGAGTTTTAACGATTTTAAGGGGCCTGGATTTGAGCCTCTTGAGAATTGCAAAGTACTGCAGCAACTCTATCTTGCTGGAAATCAAATCACATCATTGGCGAGTCTCCCTCAGCTTCCTAATTTGGAGGCAAGCTTAAAAAACCTTGCTATCTTTCTGATTTTTAATTTAAATCTTATTGTGGTCTTCAACTTCAGTGTTCATCAAAACTTTTGTATTTGTTATGCTTCATTTTTGCAGTTCCTCTCAGTAGCTCAGAATAAGTTGAAATCTCTCACTATGGCAAGCCAACCTCGACTACAGGTTGTCTTAGCTGCCAGCAAAAACAAAATTTCTACTCTCAAGGGTTTCCCATATTTACCAGTTCTTGAGCATTTGCGAGTGGAGGAAAATCCTATACTTAAGATGCCTCATTTGGAAGCAGCCTCAGTATTGCTAGTTGGACCTACTTTGAAAAAATACAATGATAGAGATCTCTCTCGTGAGGAAGTGACACTAGCAAAGCGTTATCCTGCACATACAGCTTTGTGCATTAGAGATGGTTGGGAGTTCAGTCGCCCTGAGCAAGCTGCAGATTCAACTTTCCGTTTTTTAGTTGAGAAATGGAAGGATTGTATTCCTCCGGGTTTTTTTCTCAAAGAAGCCTTCATAGATAAACCTGTGGAAGAGGATGTGTGTTGTTGTCATTTCACAGTTGTTCATGATGGTGCAGCTAGTACAGACCCACCATTAGTTTTAAAATATCAATGGTTTTGTGGTGATATATCACTTTCTAATTTTGTCCCCATTGCAGATGCTACCAACGAGATTTACTGGCCAAAGCATGGTGACATTGGAAAAGTTCTGAAAGTGGAATGCACTCCCACTTTAGGAGAAATGGATTATCCTCCTATATTTGCCATTTCTTCCCGTGTTTCACGAGGGAATGGAATCCCAAAGGTTGTAAACCTTGAAGTGCACGGGGAACTGAAAGAAGGAAGTATCATCAGGGGTTGTGCTAAGGTTGCATGGTGTGGTGGAACACCAGGAAAAGGTGTTGCTAGTTGGTTACGGAGAAAGTGGAACAGCAGCCCTGTGGTCATCGTTGGGGCAGAAGATGAAGAGTATCAACTAGCTATTGATGATGTTGATTCAAGTTTAGTTTTCATGTACACACCAGTAACAGAAGAAGGTGCCAAAGGAGAACCTCAATACAAATATACAGATTTTGTAAAAGCTGCTCCTCCTTCTGTCAGTAATGTTAAAATAGTTGGAGAGGCTGTTGAGGGAAGTACCGTCAAAGGAGTTGGGGATTATTTTGGTGGAAGGGAGGGCCCCAGCAAGTTTGAATGGTTACGGGAGAACAGGGATTCTTCTGTATTCTCTTTTTTGCACTTTACTAAAGGGCATGGAAGCATCAACTTTTTGTTAGTGTCAGCAGGTACATCTGAGTATACCTTGACCAAAGAGGATGTTGGTTGTTGTTTGGCTTTTGTCTACATTCCCATTAATTTTGAAGGTCAGGAAGGAAAATCTATGTCAGTAATGTCTCCTGTTGTGAAACAAGCACCCCCTAAAGTAATAAATGTCAAAATAATTGGTGAACTACGAGAGAATAGCAAGGTCACTGCAACTGGTATTGTAACCGGAGGAACTGAAGGATCTAGCAGAGTTCAGTGGTATAAAACATGTTCGTCAACTTTTGATGAAAACAGTCTTGAAGCATTAAGTACTTCCAAAATTGCTAAAGCATTCCGCATACCTCTTGGAGCTGTTGGCTATTACATTGTGGCAAAATTTACACCCATGACTCCTGATGGTGATTCTGGTGAACCAGCATTTGTAATATCTGATAAAGCAGTTGAGACTCTTCCCCCAAGCTTGAATTTCTTATCTATCATTGGGGATTACAGTGAAGATGGAATTTTGACAGCATCGTATGGATATGTTGGAGGTCATGAAGGAAAAAGTATATACCGTTGGTATATTCATGAGGTTGAGGGTGATTCAGGTTCTTTGATTCCAGGGGTTTCAGGACTGCAGTATCGTATTACCAAAGAAGCCATTGGAAAATTCATCTCATTCCAGTGTACTCCAGTGCGTGATGATGGTGTTGTAGGTGGACTAAGAATTTGCACGGGCCAGGAGCGCATTCGCCCTGGAAGCCCAAGATTGTTTTCTTTACACATAGTTGGAAGTGCTATTGAAGGAACAATTCTAAGAATTGAAAAAAAGTATTGGGGTGGTGAAGAGGGAGATTCAATTTACCGTTGGCTTAGGACTGGTTCTGATGGCTCAAAAAATGAAATTGTGGGTGCCACCACTGCAACGTATGTGCCCACAATTGATGACATTGGCTCCTTTATTTCTGTTTCATTTGAACCTATCCGGAGGGATTGGGCTCGTGGACCCATGGTTCTGTCTGAACAAATTGGGCCTATAATACCTGGTCCCCCAACTTGTCGTTTGCTGGAATTTGTTGGATCAATGATAGAAGGGCAGCGCTTGAACTTTAATGCTGTGTATAGTGGGGGAGAGCAAGGAGATTGTACCCATGAGTGGTTTAGGGTAAAGGACAATGGTGTACGAGAGAAATTAAGTAGCAATGCAGACTTTTTGGATTTGACTCTTGAGGATGTTGGTACGTGCATTGAAATAATCTATACACCTGTACGCAAAGATGGAATCAGAGGCAACCCAAAGAGCATAGTGTCTGATCTGATTTCTCCTTCGGATCCTAAGGGAATGGATCTTGTAATTCCTGACTGCTGTGAAGACATAGAACTTATACCTCTGAGAAAATATTTTGGTGGACATGAAGGGGTTGGAGAGTATATTTGGTATCGGACAAATCATAAACTTGAAGGATCTGAACTACTAGATATATCTAATGCTTCTGATGTTGTAATATGTGGGACAGAGCCAACATATAAACCATTACTTAAAGATGTTGGAGCTTACTTGGCTTTGTATTGGGTGCCTACTCGTGCAGATGGCAAATGTGGGGAGCCATTGATTGCAATTTGCAGTACCCCAGTTTCCCCTGCTCCTCCAGTAGTTTCTAATGTACATGTGAAAGAGTTGTCCTCGGGAATTTATTCTGGAGAAGGTGAATATTTTGGTGGACATGAAGGAGAAAGTCTCTTTAGCTGGTATAGAAAAAATAACAAGGGGACCATTGAACTGATTAATGGGGCAAATTCTAAAATCTACGAAGTTACTGATTCAGATTACAATTATCGTTTGTTGTTTGGATATACACCCGTTCGTTCAGATTCAGTTGTGGGAGAACCCATATTATCTGATCCAACTAACATTATTTTTCCAGAGCTTCCATATGTGGAGATGCTTGCTCTGACAGGAAAGGCAGTTGAAGGTGACGTACTTACAGCTGTTGAAGTGATTCCAAATAGTGAGACTCAACAACATGTTTGGAGCAAGTACAAGAAAGATATAAGATACCAATGGTATGctatgcaaactaatgcccctcctatgcaacaagttttatcgtgtgatttttgtggaggtgaccaccctaatggttattgtgccgaatcatctaattcATGTGAGTGTATCGTAACTGATGTGTTTGGAAGGTCAGGTGAGGCAGTATGCATTGAGACAACACCTGTATTGCCAGGGATTCCTAGAATACACAAGCTGGAGATTGAGGGAAGGGGATTTCATACCAATCTCTATGCTGTTCGTGGCATTTACAGTGGTGGGAAGGAAGGGAAAAGTAGAGTTCAGTGGCTTAGATCAATGGTTGGAAGTCCTGACCTGATCTCTATACCAGGAGAAACAGGCAGAATGTATGAAGCGAATGTTGATGATGTTGGCTATAGGCTGGTGGCTATCTATACTCCTGTAAGAGAGGATGGAGTAGAGGGACAATCAATTTCAGTATCCACAGAGCCAATTGCAGTTGAGCCTGATGTTCTAAAAGAAGTGAAACAGAACCTTGATCTTGGATCAGTGAAGTTTGAGGTATTGTGTGACAAAGACCAAAACTCAAAAAAGATTTCATCAGTGGGCACCTATGAGAGACGAATCCTTGAAATTAACAGGAAAAGAGTCAAGGTGGTAAAGCCTGCCACTAAGACTTCTTTTCCAACTACAGAAATTCGTGGTAGTTATGCCCCTCCCTTTCATGTGGAGCTTTTCAGGAATGATCAACACCGTCTAAAAATTGTAGTGGACAGTGATAATGAAGCAGATTTGATGGTCCAGTCACGACACATTCGGGATGTAATTGTTCTTGTGATTCGAGGACTAGCTCAGCGATTCAATAGTACTTCCCTCAATTCCCTTCTCAAGATCGAGACATAA 5244 0.4319 MEVSSEQSGEEVTPETLRSPSSKNIPEVSRRAAKTAAEPGGSVSAKRKVEPRSGSGTGSVAATRRSGSIGGSASAVSAPRRNSTGGLLQKASISDGRRKTGGDSAAGAKSGASSAAEPARRSLPELRRISVASSRAGAAAKPAVASPAGSASRSAGGSKVEVAKKPVSKPALSASVSALSVSRRISSSSVDSTGSSGGSGRRAVSRVSSPTVSSGLKAGSLSTSQDRTSALSGRRRGGTPDSRDSRFIVLPQIEIKANDDLRLDLRGHRVRSLNASGLNLSSNLEFVYLRDNLLSTLEGVEILTRVKVLDLSFNDFKGPGFEPLENCKVLQQLYLAGNQITSLASLPQLPNLEASLKNLAIFLIFNLNLIVVFNFSVHQNFCICYASFLQFLSVAQNKLKSLTMASQPRLQVVLAASKNKISTLKGFPYLPVLEHLRVEENPILKMPHLEAASVLLVGPTLKKYNDRDLSREEVTLAKRYPAHTALCIRDGWEFSRPEQAADSTFRFLVEKWKDCIPPGFFLKEAFIDKPVEEDVCCCHFTVVHDGAASTDPPLVLKYQWFCGDISLSNFVPIADATNEIYWPKHGDIGKVLKVECTPTLGEMDYPPIFAISSRVSRGNGIPKVVNLEVHGELKEGSIIRGCAKVAWCGGTPGKGVASWLRRKWNSSPVVIVGAEDEEYQLAIDDVDSSLVFMYTPVTEEGAKGEPQYKYTDFVKAAPPSVSNVKIVGEAVEGSTVKGVGDYFGGREGPSKFEWLRENRDSSVFSFLHFTKGHGSINFLLVSAGTSEYTLTKEDVGCCLAFVYIPINFEGQEGKSMSVMSPVVKQAPPKVINVKIIGELRENSKVTATGIVTGGTEGSSRVQWYKTCSSTFDENSLEALSTSKIAKAFRIPLGAVGYYIVAKFTPMTPDGDSGEPAFVISDKAVETLPPSLNFLSIIGDYSEDGILTASYGYVGGHEGKSIYRWYIHEVEGDSGSLIPGVSGLQYRITKEAIGKFISFQCTPVRDDGVVGGLRICTGQERIRPGSPRLFSLHIVGSAIEGTILRIEKKYWGGEEGDSIYRWLRTGSDGSKNEIVGATTATYVPTIDDIGSFISVSFEPIRRDWARGPMVLSEQIGPIIPGPPTCRLLEFVGSMIEGQRLNFNAVYSGGEQGDCTHEWFRVKDNGVREKLSSNADFLDLTLEDVGTCIEIIYTPVRKDGIRGNPKSIVSDLISPSDPKGMDLVIPDCCEDIELIPLRKYFGGHEGVGEYIWYRTNHKLEGSELLDISNASDVVICGTEPTYKPLLKDVGAYLALYWVPTRADGKCGEPLIAICSTPVSPAPPVVSNVHVKELSSGIYSGEGEYFGGHEGESLFSWYRKNNKGTIELINGANSKIYEVTDSDYNYRLLFGYTPVRSDSVVGEPILSDPTNIIFPELPYVEMLALTGKAVEGDVLTAVEVIPNSETQQHVWSKYKKDIRYQWYAMQTNAPPMQQVLSCDFCGGDHPNGYCAESSNSCECIVTDVFGRSGEAVCIETTPVLPGIPRIHKLEIEGRGFHTNLYAVRGIYSGGKEGKSRVQWLRSMVGSPDLISIPGETGRMYEANVDDVGYRLVAIYTPVREDGVEGQSISVSTEPIAVEPDVLKEVKQNLDLGSVKFEVLCDKDQNSKKISSVGTYERRILEINRKRVKVVKPATKTSFPTTEIRGSYAPPFHVELFRNDQHRLKIVVDSDNEADLMVQSRHIRDVIVLVIRGLAQRFNSTSLNSLLKIET 1747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01266 1747 PANTHER 187-KDA MICROTUBULE-ASSOCIATED PROTEIN AIR9 389 1747 - -
Cca08g01266 1747 SUPERFAMILY L domain-like 256 448 - -
Cca08g01266 1747 MobiDBLite consensus disorder prediction 1 244 - -
Cca08g01266 1747 MobiDBLite consensus disorder prediction 56 90 - -
Cca08g01266 1747 MobiDBLite consensus disorder prediction 173 232 - -
Cca08g01266 1747 MobiDBLite consensus disorder prediction 1 28 - -
Cca08g01266 1747 Gene3D Ribonuclease Inhibitor 261 360 IPR032675 -
Cca08g01266 1747 ProSiteProfiles Leucine-rich repeat profile. 283 304 IPR001611 GO:0005515
Cca08g01266 1747 Gene3D - 540 604 - -
Cca08g01266 1747 Gene3D - 1028 1104 - -
Cca08g01266 1747 Gene3D - 930 1010 - -
Cca08g01266 1747 PANTHER EXPRESSED PROTEIN 389 1747 - -
Cca08g01266 1747 PANTHER EXPRESSED PROTEIN 16 353 - -
Cca08g01266 1747 Gene3D Ribonuclease Inhibitor 374 485 IPR032675 -
Cca08g01266 1747 ProSiteProfiles Leucine-rich repeat profile. 329 350 IPR001611 GO:0005515
Cca08g01266 1747 PANTHER 187-KDA MICROTUBULE-ASSOCIATED PROTEIN AIR9 16 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01266 Cca-Chr8 37795310 37842732 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01266 - - gmx:100807099 2840.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01266 08 37795310 37842732 Cca08g01266 08 37795310 37842732 ECH