Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01265 ATGAACTTCAGGTTCCACAACCTCCTCGGAGTCCCCTACCGAGGGGGCAACGCGGTCATTTCCAACAACACCCTGCTACTCTCCCCCATTGGTAACCGCGTCGCCGTCACCGACCTCCTCAAGTCCCAAACCTCCACGCTCCCCATCCAATCCTCCTCCAACGTCACCCGCATCGCCGTCTCCCCCGACGCCACCTTCCTCCTCGCCGTCGACGACCGCAACCGCTGCCTCTTCATCAACCTTCGCCGCCGCATCCTCCTCCACCGCATTACCTTCAAGCACCGCGTCGCCGCCGTCGAGTTCAGCCCCGACGGCGCCCTCATCGCCGTCGCCGCCGGCAAGTTCGTCCAGATCTGGCGCTCGCCGGCGTTCCGCCGTGAGTATTTCCCCTTCGAGCTGGTTCAGACCTTCGCCGACTTCGACGCGAAGGTCACCGCCATTGATTGGAGCCCCGACTCGAAGTACCTACTCGTCGGGTCCAAGGACCTAACCGCGAGAATCTTGTGTTTGAAGAAACTGAATAGGGGTGTTAAGAAGAGGCCTTTTATGCTCCTAGGGCATAGGGATTCTGTTGTAGGGTCGTTCTTCGGTGTCAATTCGAATGATAATAGGGTTTGTAAGGCTTATACCGTTACTAGGGATTGTTATTTGTTTAGCTGGGGTTTTAGTTTtgatggtgagggtgagggtgatggtgagggtTCCGAGCCTCCGTCTCCGGGTACGCCGGAGAGggatgtggatgggaatttggagattagtgagaatgatggtgtgaggaagaggaagaaaattgatgttgaggatggtgatgaGGGTTATTTGAGTAGAGGGAAGTGGGAGTTATTGAGGAAGGATGGTTTTATGCAGGGATCGGCGAAGGTGACGGCGTGTGATTATCATAGAGGGCTGGATATGGTGGTTGTTGGATTTTCTAATGGCCTGTTTGGTTTGTATCAGATGCCGGATTTTGTGTGCATTCATTTGTTGTCTATATCGAGGGAGAAGATTACCACTGCGGTGTTTAATGAGCTTGGGAACTGGTTGACTTTTGGCTGTGCCAAACTGGGGCAGCTTCTGGTGTGGGAGTGGAGGTCCGAGAGCTACATTTTGAAGCAGCAGGGTCATTACTTTGATGTGAACTGTGTTGCATATTCGGCAGACTCGCAACTCCTTGCTACTGGAGCAGATGATAATAAAGTGAAGGTGTGGACTCTTTCCTCGGGCTTTTGCTTTGTTACATTTTCTGAGCATACAAATGCTGTTACGGCTCTACATTTTATGGCAAGTAACAATTGCCTGCTTAGTGCATCACTTGATGGGACCATTCGAGCATGGGATTTATTACGTTACCGGAATTTTAGGACATTTACAACCCCTTCTTCAAGGCAGTTTGTTTCTCTGACAGCTGATCAAAGTGGTGAAGTGATATGTGCTGGCACTAAAGATTCCTTTGAGATTTTTGTTTGGTCAATGAGAACGGGTCGGTTATTGGATGTGCTTAGTGGCCATGAAGCTCCTGTTCATGCGCTGATGTTTTCTCCTACAAATGCTGTCTTGGCTTCATCATCATTTGACAAAACTGTTCGGTTGTGGGATGTCTTTGATGGAAAAGGAGCAGTTGAAACCTTTCCTCACACGCATGATGTTCTTACAGTAGCTTATCGTCCAGATGGAAGGCAGATAGCTTGCAGCACATTAGATGGGCAAATTCATTTTTGGGACCCAATAGAGGGTTTGCTGATGTACACCATAGAAGGTTCTAGAGATATTGCTGGTGGGCGTCTTATGACTGACCGTAGATCAGCTGCTAACTCAACTTCAGGGAAGTTCTTCACAACCTTGTGTTATTCAGCTGATGGAAGCTACATATTAGCTGGAGGAAGTAGCAGATACATCTGCATGTATGATGTTGCAGATCAGGTGTTGCTTCGACGTTTCCAGATAACTCTCAATCTCTCATTAGATGGAGTGCTTGACATTTTAAACTCAAAGAATATGACACAAGCTGGCCCACTAGATTTGATCGATGATGACAATAGTGACATTGAAGAAGGTGTTGACAAACAAACACGAGGGAAAATAGGGTTAGACTTGCCAGGATCTATGCCTAATCGTGGAAGGCCTGTTATTCAGACAAAATGCCTGAGAATTGCGCCAACAGGGCGGAGTTTTGTTGCAGCAACAACTGAGGGAGTTTTGGTTTATTCTGTTGATGAATCGTTCATATTTGATCCAACTGACCTAGATATTAATGTTACACCAGAGGCTGTTGAAGAAGCTATTCATGAAAATCAACCAAGTAAAGCCTTGATTCTTAGCCTTCGTCTGAATGAGGATTCTTTTATTAAAAAATGTATATTTTCGGTTAGTCCAGCAGATATTCCAGCGGTTGCCACATCAATCCCTTACAGATATATCCAGCGATTAGTTGAGGCACTTGCGGATCTTCTAGAAAACTGCCCACATTTGGAATTTATACTTAGATGGTGTCAGGAGCTCTGCAAAGCCCATGGAAATTCTATTCAGCAGAACTCTAGAAATCTGTTACCATCATTAAAATCCTTGCAAAAGGCAATCACTAGAATACATCAGGATCTTGCAGATACATGCTCCTCCAATGAATATATGCTGCGATATTTATGTTCTTCTGGAGCCAAGGAATGA 2667 0.4488 MNFRFHNLLGVPYRGGNAVISNNTLLLSPIGNRVAVTDLLKSQTSTLPIQSSSNVTRIAVSPDATFLLAVDDRNRCLFINLRRRILLHRITFKHRVAAVEFSPDGALIAVAAGKFVQIWRSPAFRREYFPFELVQTFADFDAKVTAIDWSPDSKYLLVGSKDLTARILCLKKLNRGVKKRPFMLLGHRDSVVGSFFGVNSNDNRVCKAYTVTRDCYLFSWGFSFDGEGEGDGEGSEPPSPGTPERDVDGNLEISENDGVRKRKKIDVEDGDEGYLSRGKWELLRKDGFMQGSAKVTACDYHRGLDMVVVGFSNGLFGLYQMPDFVCIHLLSISREKITTAVFNELGNWLTFGCAKLGQLLVWEWRSESYILKQQGHYFDVNCVAYSADSQLLATGADDNKVKVWTLSSGFCFVTFSEHTNAVTALHFMASNNCLLSASLDGTIRAWDLLRYRNFRTFTTPSSRQFVSLTADQSGEVICAGTKDSFEIFVWSMRTGRLLDVLSGHEAPVHALMFSPTNAVLASSSFDKTVRLWDVFDGKGAVETFPHTHDVLTVAYRPDGRQIACSTLDGQIHFWDPIEGLLMYTIEGSRDIAGGRLMTDRRSAANSTSGKFFTTLCYSADGSYILAGGSSRYICMYDVADQVLLRRFQITLNLSLDGVLDILNSKNMTQAGPLDLIDDDNSDIEEGVDKQTRGKIGLDLPGSMPNRGRPVIQTKCLRIAPTGRSFVAATTEGVLVYSVDESFIFDPTDLDINVTPEAVEEAIHENQPSKALILSLRLNEDSFIKKCIFSVSPADIPAVATSIPYRYIQRLVEALADLLENCPHLEFILRWCQELCKAHGNSIQQNSRNLLPSLKSLQKAITRIHQDLADTCSSNEYMLRYLCSSGAKE 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01265 888 SUPERFAMILY DPP6 N-terminal domain-like 19 202 - -
Cca08g01265 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 456 IPR001680 GO:0005515
Cca08g01265 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 448 - -
Cca08g01265 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 373 414 IPR001680 GO:0005515
Cca08g01265 888 PANTHER WD40 REPEAT PROTEIN 1 884 IPR027145 -
Cca08g01265 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Cca08g01265 888 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Cca08g01265 888 PRINTS G protein beta WD-40 repeat signature 434 448 IPR020472 -
Cca08g01265 888 PRINTS G protein beta WD-40 repeat signature 520 534 IPR020472 -
Cca08g01265 888 ProSitePatterns Trp-Asp (WD) repeats signature. 434 448 IPR019775 -
Cca08g01265 888 Gene3D - 23 221 IPR015943 GO:0005515
Cca08g01265 888 Pfam Dip2/Utp12 Family 778 883 IPR007148 -
Cca08g01265 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Cca08g01265 888 Pfam WD domain, G-beta repeat 141 167 IPR001680 GO:0005515
Cca08g01265 888 Pfam WD domain, G-beta repeat 547 575 IPR001680 GO:0005515
Cca08g01265 888 Pfam WD domain, G-beta repeat 411 447 IPR001680 GO:0005515
Cca08g01265 888 Pfam WD domain, G-beta repeat 374 404 IPR001680 GO:0005515
Cca08g01265 888 Pfam WD domain, G-beta repeat 496 533 IPR001680 GO:0005515
Cca08g01265 888 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 542 IPR001680 GO:0005515
Cca08g01265 888 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Cca08g01265 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 534 - -
Cca08g01265 888 MobiDBLite consensus disorder prediction 227 253 - -
Cca08g01265 888 Gene3D - 281 485 IPR015943 GO:0005515
Cca08g01265 888 SUPERFAMILY Tricorn protease domain 2 545 747 - -
Cca08g01265 888 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 373 409 - -
Cca08g01265 888 CDD WD40 326 629 - -
Cca08g01265 888 SUPERFAMILY WD40 repeat-like 127 580 IPR036322 GO:0005515
Cca08g01265 888 Gene3D - 486 674 IPR015943 GO:0005515
Cca08g01265 888 SMART WD40_4 494 533 IPR001680 GO:0005515
Cca08g01265 888 SMART WD40_4 323 363 IPR001680 GO:0005515
Cca08g01265 888 SMART WD40_4 537 575 IPR001680 GO:0005515
Cca08g01265 888 SMART WD40_4 598 637 IPR001680 GO:0005515
Cca08g01265 888 SMART WD40_4 83 120 IPR001680 GO:0005515
Cca08g01265 888 SMART WD40_4 408 447 IPR001680 GO:0005515
Cca08g01265 888 SMART WD40_4 130 169 IPR001680 GO:0005515
Cca08g01265 888 SMART WD40_4 450 491 IPR001680 GO:0005515
Cca08g01265 888 SMART WD40_4 40 80 IPR001680 GO:0005515
Cca08g01265 888 SMART WD40_4 366 405 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01265 Cca-Chr8 37778358 37786871 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01265 472 648 Miscellaneous Gene Families AT5G08390 20.339 5.18e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01265 K14558 - gmx:100526905 1612.43