Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01261 ATGGAGGAGGAAGCGAAAGAAACGCAGAGCGCAGTGAGAATATTCGTGGGAGGCTTGGGCGAAGCCGTGAGCGACGAAGATCTCCGAACCCTATTCTCGTCTCTGGGCACAGTCCAAACCATCCGAACCATCCGAACCAAAGGTCGCAGCTTCGCCTACCTCGACTTCCTCACCGACCCTAAATCCCTCTCCAAGCTCTTCAGCAAGTACAATGGGTGTCTGTGGAAGGGTGGAAGGTTGAAACTTGAGAAGGCTAAAGAGGACTATCTGACGCGTTTGAAGAGGGAATGGGAACAAGAGGCTCTCGCTGATGCTACTCAACCACCCCCCGTTGTTCCTCAGGAAGTGCCCAAAAGCCTCAGTGTTTTCTTTCCCAGATTGAGAAAGGTGAAATCCATACCATTCAATGGAACTGGCAAGCACAAATACAGTTTTCAGAATATTAAAGTTCCTCCACTCCCTGTGCATTTTTGTGATTGTGAGGAGCATTGTAGTCCTTTTGTCAATGAAAGAGAAAAGCAATCTATTGATGGGGCAGCTGAAAGTGGTGGAATGAATGATGAAGAGATTAACATAATGAATGCGGTGATGAACAAGCTATTTGAAAAAGAAAAGGTTTCCAATGCCAAGAACCTTGGAGAGGAGAAGGATTCTTTTGAATCACCTGATGCTTTACATTCTGATGAATGCGAAGATAGTGCAACAGATGAAGATGATCTCATTATTAACATGCAGACGAGGAAAAATAAAACAGCTTTAATAGGGAACCAGGAACTTGAAAAGATCTTGGAAAATCAGGAGTGGTCGAATAAAACAAAAGTTGATAAGGAAGAACCCAACAAGAGCACGCCTCAAGTGCAAAAACGGAATAATAGCAATCCTGCCAAGAACAAGAAGAGAAAATCACTTCCAAAATTGGAAGTGTCTACTACCTCGGGAGGCAAGAGTAATATGCAGACCCTTTCAGATGAGGAGGGATCTGATGCCCAGCCTACTGAACTAGAAGATGATGTTGAAGAATTGACTAAAGTTTCATGGTCTCAGAAGTCTTCATGGAGAGAACTTCTCGGTGACGGAGGCAACACTTCTTTCAGTGCTTCTCTGATATTGCCAGAGTTGGACTCTGGTAAGAATCAACAAAGTTCTGAACATCTGAGCACATCCATATCTACAGACAGCGAAACTGAAAACATGGAAAGTGATGGACACCTATGGAGCAAATCTACCAATACACAAGTAATAAAAGAGCTTGCTGAAGTTCAACCTACCAATGAACAAGTGATAAAAGAGCTTGCTGAAGCTCAACCTGCCAATAAACAAGTGATAGAAGATCTTAACGAAATGCAGAATAATAATAATGTGGTACCTAATAAGACAGGTAGAGGTGCTTCATGGCGGCGAAAACAATCCTGGACCCAACTGGTTAGTGAGAATAACAGTTCATTTAGCATTTCACATATTTTGCCTGGCATTACTTTCCCAGAGCCAATGGCCAAGGAGCCAATTATGGAACCTGCCATTTCCAATGATTGCAAGCATAATGATGTAGCCCAGGATACTATTGATAAAGTTCTCAGTGATGGGTTTAACTCAAGGGAGATCATACCAGAAAGGATTCAGCATATTGGTGCCAATGACATTGTGCCTGGTTCAGTAGCTGAGGAAAAAGTTGAAACAAGTCCAAGGGAAAGATCCATTGAAAATGTTGAAGTAGGTGAAACTTGCAGATTCATGAGAAGTGCAGCATCTTTGAAGGACTGGGCAAAAGCTAAGGCTGCTATAAGCAGATCGCTCAAAAGGAAACGTGGTGTGAAGTATGATCATAAGTTTCCATAG 1836 0.4292 MEEEAKETQSAVRIFVGGLGEAVSDEDLRTLFSSLGTVQTIRTIRTKGRSFAYLDFLTDPKSLSKLFSKYNGCLWKGGRLKLEKAKEDYLTRLKREWEQEALADATQPPPVVPQEVPKSLSVFFPRLRKVKSIPFNGTGKHKYSFQNIKVPPLPVHFCDCEEHCSPFVNEREKQSIDGAAESGGMNDEEINIMNAVMNKLFEKEKVSNAKNLGEEKDSFESPDALHSDECEDSATDEDDLIINMQTRKNKTALIGNQELEKILENQEWSNKTKVDKEEPNKSTPQVQKRNNSNPAKNKKRKSLPKLEVSTTSGGKSNMQTLSDEEGSDAQPTELEDDVEELTKVSWSQKSSWRELLGDGGNTSFSASLILPELDSGKNQQSSEHLSTSISTDSETENMESDGHLWSKSTNTQVIKELAEVQPTNEQVIKELAEAQPANKQVIEDLNEMQNNNNVVPNKTGRGASWRRKQSWTQLVSENNSSFSISHILPGITFPEPMAKEPIMEPAISNDCKHNDVAQDTIDKVLSDGFNSREIIPERIQHIGANDIVPGSVAEEKVETSPRERSIENVEVGETCRFMRSAASLKDWAKAKAAISRSLKRKRGVKYDHKFP 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01261 611 MobiDBLite consensus disorder prediction 374 395 - -
Cca08g01261 611 MobiDBLite consensus disorder prediction 270 343 - -
Cca08g01261 611 SMART rrm1_1 13 83 IPR000504 GO:0003723
Cca08g01261 611 PANTHER TRANSCRIPTIONAL REGULATOR 3 602 - -
Cca08g01261 611 CDD RRM_NOL8 13 86 IPR034138 -
Cca08g01261 611 MobiDBLite consensus disorder prediction 212 229 - -
Cca08g01261 611 MobiDBLite consensus disorder prediction 306 327 - -
Cca08g01261 611 MobiDBLite consensus disorder prediction 212 236 - -
Cca08g01261 611 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 65 IPR000504 GO:0003723
Cca08g01261 611 Gene3D - 1 90 IPR012677 -
Cca08g01261 611 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 87 IPR000504 GO:0003723
Cca08g01261 611 SUPERFAMILY RNA-binding domain, RBD 3 100 IPR035979 GO:0003676
Cca08g01261 611 MobiDBLite consensus disorder prediction 374 404 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01261 - - gmx:100808161 894.034