Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01259 ATGGCTTGCGTGAAATTGGGTTCCAAAGCCGATGCTTTCCAGCGTCAAGGGCAGGCCTGGTTCTGCACGACTGGGCTTCCTAGTGATATAGTTGTTGAAGTTGGGGAGATGTCTTTTCATCTGCACAAGTTTCCTTTGCTGTCTAGAAGTGGGGTTCTAGAAAGAATGATTGCCGAGGCTTCTGAATCAGAGGAAGAATGTGTCATATCCTTAGGTGACATTCCTGGTGGGGCCAAAACATTTGAACTTGTGGCAAAATTCTGCTACGGTGTGAAACTTGAACTTACAGCATCAAATGTTGTGTACCTCTGGTGTGCTGCAGAACGTCTTGAAATGACTGAGGAATATGGTGAAGGCAATCTTATTTCACAGGCTGAGAACTTTTTCAATCAAGTGGTCCTCCGCAGTTGGAAAGACTCTATGAGGGCACTTCAAAGCTGTGATGATGTTTCATCCCATGCTGAAGAGCTCCACATTGTGAAAAGATGCATTGAATCACTGGCAGCAAAGGCATCTACTGACCCAAATTTATTCGGGTGGCCAGTGTTGGAGCGTGGTGGTCCTTTGCAGAGCCCTGGTGGAAGTGTTTTGTGGAATGGAATAAGTACTGGGGCAAGACCAAAAAATTCAAGTGCAGATTGGTGGTATGAGGATGTAACAAATTTGAGTTTACCTCTTTATAAGAGATTGATAGCTATCATGGAATCTCGAGGCATTAGGCAGGAGATTATTGCCGGTTCTCTTGCTTTCTATGCTAAAACATATCTGCCTGGGTTGAATCGACGTCAGGTTTCTGGTGAGTCCAGTGCCCGTCTGACACTAGCTATGGGGTCTCCACTATGTGAAGATGACCAGAAGATTCTACTGGAAGAGATAGACGAATTGCTCCCAATGCAGAAGGGACTGGTCCAAACAAAGTTTCTTTTTGGTCTACTTCGAACAGCCATGATTCTACGAGTGAGCCCCTCTTGCATATCAAACTTGGAGAGACGGATTGGCATGCAGCTTGATCAAGCTACTCTGGAAGATCTCTTGATGCCTAATTTCTCATATTCAATGGAGACACTTTACAACGTTGACTGTGTGCAAAGAATTCTTGACCATTTCCTTGCCATGGATCAGGATACTGGTGGTGCCTCCCCATGCTCAATTGATGATGGTCAATCGATTGGGTCACCTTCTCTGACACCAATCACAATGGTAGCCAAACTGATTGATGGTTACCTGGCAGAGGTTGCCCCAGATGTTAACTTAAAACTTCCCAAGTTTCAAGCCCTTGCTGCTGCTGTTCCAGAGTATGCCAGGCCTTTGGATGATGGTTTATATCGCGCCATAGATATTTTTTTGAAGTCTCACCCATGGTTGGTGGAATCTGAGAGAGAGCAACTATGTAGGCTGATGGATTGCCAGAAGCTCTCATTAGAAGCATGCACCCACGCTGCGCAAAACGAGAGGCTACCCATCAGAGTGATAGTCCAAGTTCTATTTTTCGAGCAGCTCCAGCTTCGGACTTCAATCGCCGGCTGCTTTCTAGTTTCGGACAATCTTGATGGATCAAGGCAATTAAGAAGCGGTTTTGTCGGATCAACAGAGGGCGGCTGGGCGTCGGCTGTGAAGGAAAACCAGGTTTTGAAAGTGGGAATGGATAACATGAGGATGAGGGTGTCTGAGCTTGAGAAGGAATGCTCAAACATGAGGCAGGAGATCGAGAAACTGGGTCGCACGAAGGGAACAAGCGCTTGGGGAACCGTGTCGAAGAAACTAGGGTTTAAGTTAAAGTCTCAGATGTGTAGTGCTCAAGAAGGGTCAGTTAGCAACCAGAATGATGCAAATAGTAAGGTTGAGAAGCTGAAGGACAGACATGTAAAGCACAAGAAAAGTTCTTCTGTTAGTGACAAAGCATCAGTCTCTTCAATTGTTCATTCGTAG 1929 0.4572 MACVKLGSKADAFQRQGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVLERMIAEASESEEECVISLGDIPGGAKTFELVAKFCYGVKLELTASNVVYLWCAAERLEMTEEYGEGNLISQAENFFNQVVLRSWKDSMRALQSCDDVSSHAEELHIVKRCIESLAAKASTDPNLFGWPVLERGGPLQSPGGSVLWNGISTGARPKNSSADWWYEDVTNLSLPLYKRLIAIMESRGIRQEIIAGSLAFYAKTYLPGLNRRQVSGESSARLTLAMGSPLCEDDQKILLEEIDELLPMQKGLVQTKFLFGLLRTAMILRVSPSCISNLERRIGMQLDQATLEDLLMPNFSYSMETLYNVDCVQRILDHFLAMDQDTGGASPCSIDDGQSIGSPSLTPITMVAKLIDGYLAEVAPDVNLKLPKFQALAAAVPEYARPLDDGLYRAIDIFLKSHPWLVESEREQLCRLMDCQKLSLEACTHAAQNERLPIRVIVQVLFFEQLQLRTSIAGCFLVSDNLDGSRQLRSGFVGSTEGGWASAVKENQVLKVGMDNMRMRVSELEKECSNMRQEIEKLGRTKGTSAWGTVSKKLGFKLKSQMCSAQEGSVSNQNDANSKVEKLKDRHVKHKKSSSVSDKASVSSIVHS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01259 642 PANTHER OS12G0117600 PROTEIN 1 616 IPR043454 -
Cca08g01259 642 CDD BTB_POZ_NPY3-like 19 122 - -
Cca08g01259 642 PANTHER - 1 616 - -
Cca08g01259 642 Pfam NPH3 family 213 477 IPR027356 -
Cca08g01259 642 ProSiteProfiles BTB domain profile. 28 97 IPR000210 GO:0005515
Cca08g01259 642 Coils Coil 541 575 - -
Cca08g01259 642 MobiDBLite consensus disorder prediction 600 642 - -
Cca08g01259 642 Pfam BTB/POZ domain 27 113 IPR000210 GO:0005515
Cca08g01259 642 ProSiteProfiles NPH3 domain profile. 213 501 IPR027356 -
Cca08g01259 642 SUPERFAMILY POZ domain 16 114 IPR011333 -
Cca08g01259 642 Gene3D Potassium Channel Kv1.1; Chain A 11 133 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01259 Cca-Chr8 37573472 37578480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01259 8 629 EF-hand Containing Proteins AT3G44820 46.861 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01259 - - gmx:100794676 1196.03