Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01256 ATGGATCACCATGAGGACGAGAGTAACAGCAAACCAGATGATGAGGAGGCTGTTGCTCGCCTTGAGGAAATTAAAAAATCTATTGAGGCGAAGATGGCTTTACGTCAAAGCAATTTGAATCCTGAAAGGCCGGACTCAGGGTTTTTAAGGACATTGGATTCCAGCATTAGGCGCAACACTGCAGTTATTAAGAAGCTGAAGCAGATTAATGAAGAGCAGCGTGAATCACTGATGGATGAGTTACGAAGTGTAAATTTAAGCAAATTTGTCAGTGAAGCTGTGACTGCTATATGTGAGGCCAAGCTTAGAAGTTCTGATATACAAGCTGCAGTTCAGATCTGTTCTTTGCTTCATCAAAGGTACAAGGACTTTGCGCCAAGCCTGATTCAAGGGCTTCTCAAAGTCTTCTCTCCTGGAAAACCTGGCGATGAATCAGATACAGACAGGAATTTGAAGGCAATGAAGAAGCGTAGCACTCTGAAGCTTTTGCTCGAACTGTTTTTTGTTGGAGTTATTGAAGATGGTGGCATTTTTATCAATATCATAAAAGATCTTACCAGTGGGGAACAGCTAAAAGATCGGGATGCTGCACAAACAAGTTTGACCCTTCTTTCTAGTTTTGCTCGGCAAGGGAGAATTTTTCTAGGACTTTCTGTTAGTGGGCCAGAAATTCATGAAGAGTTTTTTAAAGGCCTTAACATCACAGCAGATCAGAAGAAAGTTTTCCGGAAAGCATGCTATTCCTTTTATGATGCTGCTGCAGAACTACTTCAGTCTGAGCATTCTTCACTTCGATTAATGGAGCATGAAAATTCAAAGATTTTGAATGCTAAAGGAGAGCTCAGTGATGAAAATATCACTTCATATGAAAAGCTACGTAAATCCTATGATCATTTGTACCGTAATGTCTCATCATTAGCAGAAGCACTTGATATGCAGCCTCCTGTAATGCCAGAGGATGGCCACACAACTAGGGTTACCAGTGGTGAGGAGGGTATTTCTTCTGCTTCTGGTAAAGATTCTTCTGTTGTTGAACCCATATGGGATGATGAAGATACGAGGACTTTCTATGAATGTTTACCTGATCTTAGAGCTTTTGTTCCTGCTGTGCTTTTGGGTGAGACGgagtcaaaaagcaatgagcaatctgcgaagagtcaagaccaaaCAACTGAAATATTACCTGAATCAGACAAAGGTCAACAGACCACCCATGAAAGTGGAGAGGTCTCTACAGAGTCTAATACTTTACCAGAGGCAGAAAGCACAGAAAGAGTGAAGGATAAGGAGgaaaaagacaagtctaaagaattggacagagagaaggaaaaggaaaaagaaaaagatattgacaaaaagggggaaaatgaaaaagacaaaCTCAGAAGTCTTGAAGGGACAAATTTGGATGCTCTACTTCAGAGACTTCCGGGTTGTGTGAGCCGGGACCTTATAGATCAATTAACTGTGGAGTTCTGTTATCTAAATTCAAAATCGAATCGGAAAAAGCTTGTGAGGGCTTTGTTCAATGTACCAAGGACATCTTTAGAACTGCTACCATATTATTCACGCATGATTGCCACGCTCTCAACTTGTATGAAGGATGTCTCCTCCATTATGTTGCAGATGCTGGAGGAGGAATTCAACTTCTTAATAAATAAAAAGGATCAGATGAACATCGAGACAAAGATACGGAACATCAGGTTCATCGGAGAACTTTGCAAGTTCAAAATTGCCCCTCCTGGCCTAGTTTTCAGTTGTTTGAAGGCTTGTTTAGATGATTTTACACATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGGTCTCCAGAAACTACTATTCGTATGGCTAACATGTTGGAGATACTGATGCGCTTGAAAAATGTCAAAAACTTGGATCCAAGACATAGCACATTGGTGGAGAATGCTTACTACCTTTGCAAACCACCAGAAAGATCTGCACGAGTGGCTAAAGTTCGTCCTCCATTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGATAAGTCTACCATTGAGCATGTGCTGAGGCAACTGCGTAAATTACCATGGAATGAATGTGAACCATATCTTTTGAAATGCTTCATGAAGGTCTACAAAGGAAAATATGGTCAGATCCACCTGATTGCATCTCTTGCTGCTGGTTTAAGTCGCTATCATGATGAGTTTGCTGTAGCTATCGTTGATGAGGTTCTGGAGGAGATTAGAGTTGGGCTGGAGTTAAATGACCATGGGATGCAGCAAAGACGCATTGCCTACATGCGATTCTTAGGGGAGCTTTACAACTATGAACATGTAGATTCATCTGTTATTTTTGAGACGCTATATCTCATTCTCATCTATGGCCATGGGACATCAGAGCAAGACTCACTTGATCCGCCAGAAGATTGTTTTCGCATAAGGTTGATCATTACTCTGCTTGAAACTTGTGGGCATTACTTTGATCGTGGCTCTTCTAAGAGGAAACTTGATCGATTCCTAATACACTTCCAAAGGTATATTTTAAGCAAAGGGGCACTTCCTCTGGACATTGAATTTGACTTGCAGGATCTGTTTGCGGATTTGCGTCCCAATATGGTTCGTTACAATTCACTTGAGGAAGTGAATGTAGCTCTAGTAGAACTCGAGGAACATGATCGTGTAGTTTCTGCTGATAAGGCCTGTAATGAAAAACATTCTGACACTGAGAAGCCTTCAAATAGGACCACTTCTGCTGTTACAGTGGTAGGCAATGGACAGAGCATTGATAATGGTACGGAGGAAAATGGAGTGCAAGATGATGTTAATGACAGCGAGACTGATTCAGGGAGTGACACAATTGATATGGAGGGACatgatgatgaagagttggatgaggagaatcatgatgatgggtgtgagactgaggaggatgaggatgatgatgatgatgGACCTGGACCTGCTTCTGATGAGGAGGATGAAGTCCATGTAAGACAGAAGGTGACCGAGGTGGACCCTCTAGAAGAAGCCAATTTTGATCAGGAGCTCAAGGCTGTACTACAGGAGAGTATGGAACAGCGAAGGCAGGAGCTTCGAGGTCGTCCTCCATTGAACATGATGATTCCAATGAATGTATTTGAGGGATCTGCCAAGGATCACCATGGGAGGGGAATTAGTGGGGAAAGTGGTGATGAGGCACTGGATGAGGATACTGGTGGAAATAGAGAGGTTCAAGTGAGAGTTCTTGTGAAGCGTGGAAACAAGCAGCAAACAAAGCAGATGTTCATACCACGGAATTCGTCACTAGTGCAGAGTACAAAACAGAAAGAAGCAGCAGAGCTTCAAGAGAAAGAAGATATCAAGAGACTAGTCTTGGAGTATAATGATAGAGAAGAGGAGGAGCTTAATGGATTAGGGACCCAGCCAACGAACTGGATGCAGAGTGTAGGTAACAAGGCTGgtggccgtggcagtgctttggaaggaaacagtggcaggggtagtggGTCAAGACATCGGCATCATAATTATTCTGGTGGTGGAATCTACTATAGCAGAAGAAAGTGA 3576 0.3921 MDHHEDESNSKPDDEEAVARLEEIKKSIEAKMALRQSNLNPERPDSGFLRTLDSSIRRNTAVIKKLKQINEEQRESLMDELRSVNLSKFVSEAVTAICEAKLRSSDIQAAVQICSLLHQRYKDFAPSLIQGLLKVFSPGKPGDESDTDRNLKAMKKRSTLKLLLELFFVGVIEDGGIFINIIKDLTSGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKKVFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENITSYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEGISSASGKDSSVVEPIWDDEDTRTFYECLPDLRAFVPAVLLGETESKSNEQSAKSQDQTTEILPESDKGQQTTHESGEVSTESNTLPEAESTERVKDKEEKDKSKELDREKEKEKEKDIDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMIATLSTCMKDVSSIMLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECEPYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDHGMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILIYGHGTSEQDSLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFADLRPNMVRYNSLEEVNVALVELEEHDRVVSADKACNEKHSDTEKPSNRTTSAVTVVGNGQSIDNGTEENGVQDDVNDSETDSGSDTIDMEGHDDEELDEENHDDGCETEEDEDDDDDGPGPASDEEDEVHVRQKVTEVDPLEEANFDQELKAVLQESMEQRRQELRGRPPLNMMIPMNVFEGSAKDHHGRGISGESGDEALDEDTGGNREVQVRVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPTNWMQSVGNKAGGRGSALEGNSGRGSGSRHRHHNYSGGGIYYSRRK 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01256 1191 MobiDBLite consensus disorder prediction 1136 1191 - -
Cca08g01256 1191 MobiDBLite consensus disorder prediction 327 341 - -
Cca08g01256 1191 MobiDBLite consensus disorder prediction 376 419 - -
Cca08g01256 1191 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 10 1190 IPR039762 GO:0000184
Cca08g01256 1191 MobiDBLite consensus disorder prediction 1140 1154 - -
Cca08g01256 1191 Gene3D - 668 898 - -
Cca08g01256 1191 MobiDBLite consensus disorder prediction 376 454 - -
Cca08g01256 1191 Pfam Up-frameshift suppressor 2 993 1129 IPR007193 -
Cca08g01256 1191 Gene3D - 422 666 - -
Cca08g01256 1191 SMART if4_15 470 658 IPR003890 GO:0003723|GO:0005515
Cca08g01256 1191 SMART if4_15 56 278 IPR003890 GO:0003723|GO:0005515
Cca08g01256 1191 SMART if4_15 673 874 IPR003890 GO:0003723|GO:0005515
Cca08g01256 1191 Gene3D - 8 318 - -
Cca08g01256 1191 SUPERFAMILY ARM repeat 72 189 IPR016024 -
Cca08g01256 1191 Coils Coil 541 561 - -
Cca08g01256 1191 SUPERFAMILY ARM repeat 668 892 IPR016024 -
Cca08g01256 1191 Coils Coil 427 448 - -
Cca08g01256 1191 Pfam MIF4G domain 473 657 IPR003890 GO:0003723|GO:0005515
Cca08g01256 1191 Pfam MIF4G domain 675 869 IPR003890 GO:0003723|GO:0005515
Cca08g01256 1191 MobiDBLite consensus disorder prediction 939 992 - -
Cca08g01256 1191 PANTHER - 10 1190 - -
Cca08g01256 1191 MobiDBLite consensus disorder prediction 993 1015 - -
Cca08g01256 1191 MobiDBLite consensus disorder prediction 915 938 - -
Cca08g01256 1191 MobiDBLite consensus disorder prediction 903 1080 - -
Cca08g01256 1191 MobiDBLite consensus disorder prediction 420 454 - -
Cca08g01256 1191 SUPERFAMILY ARM repeat 467 661 IPR016024 -
Cca08g01256 1191 MobiDBLite consensus disorder prediction 1052 1078 - -
Cca08g01256 1191 MobiDBLite consensus disorder prediction 312 343 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01256 K14327 - gmx:100786092 2128.98