Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01253 ATGGAAGGAGGTGTACCAGAAGCTGATATGTCTGCCTTCAGAGAATGTTTGTCTCTCTCGTGGAAGAATCCTTATGTTCTTCGCCTTGCTTTCTCTGCAGGAATTGGAGGCCTTCTCTTTGGTTATGACACTGGAGTTATATCTGGGGCTCTATTGTACATCAGAGATGATTTCAAGGCAGTTGATAGAAAAACTTGGCTTCAGGAAGCCATAGTGAGTACAGCAATTGCTGGAGCAATCATAGGAGCTTCAGTAGGTGGATGGATCAACGATCGATTTGGAAGAAAGAAAGGAATAGTTCTAGCAGATGCCCTATTTTTTATTGGGTCTGTTATCATGGCTGCTTCCCCAGGCCCAGCTATTCTCATTCTGGGTAGAGTATTTGTTGGCATTGGGGTTGGAATGGCTTCAATGGCTTCCCCTCTCTACATTTCAGAGGCTTCTCCAACTAGAGTAAGAGGAGCCCTTGTGAGCCTTAACAGTTTTCTCATCACTGGGGGACAGTTCCTCTCCTATCTCATCAACTTGGCCTTCACCAAGACACCAGGAACATGGAGGTGGATGTTAGGGGTAGCAGCACTACCAGCTTTGATACAAATTGTACTAATGTTGACACTCCCAGAATCGCCTCGTTGGCTGTACCGCAAGGGTAAGGAAGAGGAAGCAATAAGGATTCTGAAAAGGATTTACGCTGCCAACGAAGTTGATGCTGAGATTCAAGCTTTGAAGGAATCTGTTGACATGGAAATTAAGGAAGCAGAAGCATCTGAGAAGGTTAACATAGTCAAGCTTTTGAGGACCACAGCTGTGAGAAGAGGTTTATATGCAGGAATGGGACTCCTAATCTTCCAACAGTTTGTGGGGATTAACACTGTGATGTACTACAGCCCCACAATTGTTCAGTTAGCTGGTTTTGCATCTAACAGAACAGCATTGCTTCTGTCACTCATCACTTCTGGCCTCAATGCATTTGGTTCAATTTTGAGCATATACTTCATTGACAAGGCTGGCAGGAGAAGGCTTGCACTGATCAGTTTGACTGGAGTTGTGTTCTCTCTGGCCATCCTAACTGTTGCTTTTCGTGAAAGCGAAATTCACTCTCCAATGGTTAGTGCTATTGAAAGCTCTCATTTCAATGGAACTTGCCCTGATTACAAAACAGCTGTGAACCCTGGTGAATGGAGTTGCATGACATGCCTTAAGGCTTCACCATCTTGTGGCTTTTGTGCTGCTGATGACAAGCTCTTACCTGGGGCATGTTTGATCTCAAATGACTCCACAAAGAAGTCATGTGGCGATGATCACAGAGCATGGTACACTAGGGGGTGTCCTAGCAAATATGGTTGGGCTGCTCTAATAGGCCTTGCTCTTTACATCATTTTCTTTTCACCAGGGATGGGAACTGTTCCATGGGTTGTGAACTCTGAGATCTATCCCTTGAGATACAGAGGAGTTTGTGGAGGAATAGCATCCACAACAGTTTGGATTTCCAACCTTATTGTTTCTGAATCCTTTTTGTCCCTAACAGAAGCTATTGGGACAGCATGGACATTCATGTTGTTTGGAATTGTGGCCATTGCGGCAATTTTCTTTGTCATTATTTTTGTTCCTGAGACCAAAGGGGTGCCAATGGAGGAAGTAGAGAAGATGCTGGAACAAAGGGGTGTGCAATTCAGGTTTTGGCAGAAGAGAGATTCTGGCTCTGATGAGAAGCACTGA 1719 0.4462 MEGGVPEADMSAFRECLSLSWKNPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKAVDRKTWLQEAIVSTAIAGAIIGASVGGWINDRFGRKKGIVLADALFFIGSVIMAASPGPAILILGRVFVGIGVGMASMASPLYISEASPTRVRGALVSLNSFLITGGQFLSYLINLAFTKTPGTWRWMLGVAALPALIQIVLMLTLPESPRWLYRKGKEEEAIRILKRIYAANEVDAEIQALKESVDMEIKEAEASEKVNIVKLLRTTAVRRGLYAGMGLLIFQQFVGINTVMYYSPTIVQLAGFASNRTALLLSLITSGLNAFGSILSIYFIDKAGRRRLALISLTGVVFSLAILTVAFRESEIHSPMVSAIESSHFNGTCPDYKTAVNPGEWSCMTCLKASPSCGFCAADDKLLPGACLISNDSTKKSCGDDHRAWYTRGCPSKYGWAALIGLALYIIFFSPGMGTVPWVVNSEIYPLRYRGVCGGIASTTVWISNLIVSESFLSLTEAIGTAWTFMLFGIVAIAAIFFVIIFVPETKGVPMEEVEKMLEQRGVQFRFWQKRDSGSDEKH 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01253 572 CDD MFS_HMIT_like 32 538 - -
Cca08g01253 572 Pfam Sugar (and other) transporter 30 360 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca08g01253 572 Pfam Sugar (and other) transporter 447 550 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca08g01253 572 SUPERFAMILY MFS general substrate transporter 18 549 IPR036259 -
Cca08g01253 572 Gene3D MFS general substrate transporter like domains 431 557 IPR036259 -
Cca08g01253 572 TIGRFAM SP: MFS transporter, sugar porter (SP) family 20 364 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01253 572 PRINTS Sugar transporter signature 37 47 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01253 572 PRINTS Sugar transporter signature 123 142 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01253 572 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01253 572 PRINTS Sugar transporter signature 452 473 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01253 572 PRINTS Sugar transporter signature 475 487 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01253 572 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 1 570 - -
Cca08g01253 572 PANTHER GENERAL SUBSTRATE TRANSPORTER 1 570 - -
Cca08g01253 572 ProSitePatterns Sugar transport proteins signature 1. 329 345 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca08g01253 572 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 540 IPR020846 GO:0022857
Cca08g01253 572 Coils Coil 232 252 - -
Cca08g01253 572 ProSitePatterns Sugar transport proteins signature 2. 128 153 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca08g01253 572 Gene3D MFS general substrate transporter like domains 20 377 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01253 Cca-Chr8 37385031 37390386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01253 1 572 Organic Solute Cotransporters AT1G30220 68.804 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01253 K08150 - gmx:100785028 1019.99