Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01251 ATGGAAGGAGGAGTACCAGAAGCTGATGTTTCTGCCTTCAGAGAATGTTTGTCTCTATCGTGGAAAAATCCTTATGTTCTTCGCCTTGCTTTCTCTGCTGGAATTGGAGGCTTTCTCTTTGGCTATGACACTGGAGTAATATCTGGAGCTCTTTTGTATATTAGAGATGATTTCAAAGAGGTGGATAGAAAGACATGGCTGCAGGAAGCAATAGTGAGTATGGCTCTTGCTGGAGCAATCATAGGAGCTTCAGTTGGTGGATGGATCAACGATCGATTTGGAAGAAAAAAGGCAATAGTTCTAGCAGATACCCTTTTTTTTATAGGGTCTATTGTGATGGCTGCTTCCATCAACCCAGCTATTCTAATTGTTGGTAGAGTTTTCGTTGGCCTTGGTGTTGGAATGGCCTCAATGGCATCACCTTTATACATCTCAGAAGCATCACCAACCAGAGTTCGAGGTGCCCTTGTTAGTCTCAATGGATTTCTCATCACAGGAGGACAATTCCTTTCATATGTCATCAACTTGGCCTTCACAAGTGCACCAGGAACATGGAGGTGGATGTTAGGAGTAGCAGCAGTACCAGCTTTCACACAAATAATATTGATGATGTTGCTCCCAGAGTCACCTAGGTGGCTCTTCAGAAAGGGGAAAGAAGAAGAAGCAAAAGAAATTCTAAGGAGGATATACCCTCCCCAAGATGTTGAAGATGAAATCAATGCTCTGAAGGAATCAGTTGAAATGGAAGTCAATGAAGCTTCAGCTTCAGATAAAGTCAGCATAATGAAGCTGCTGAAGACTAAAACTGTGAGAAGAGGTTTATATGCTGGAATGGGCCTTCAAATCTTCCAGCAATTTGTAGGGATCAACACTGTGATGTACTACAGCCCCACCATTGTTCAGTTGGCTGGTTTTGCATCCAATAGGGTGGCACTGCTTTTGTCTCTTGTCATTGCAGGGCTAAATGCATTTGGTTCTATTTTGAGCATTTATTTTATTGACAAAACTGGGAGGAAGAAGCTTTTGTTGTTCAGTTTGTCTGGTGTTGTAGTGTCCCTTGTTGTTTTAACTGTTGTTTTTCATGAGACTACAACTCACTCCCCTATGGTAAGCACAATTGAAACCTCTCACTTCAACAACACTACTTGCCCTGATTACAGAACAGCTTTGAACCCTGCTGAATGGGATTGCATGAAATGCCTCAAGGCTTCTCCAGAGTGTGGCTTTTGTGCTTCTAGGGCTAATAAGCTTTTACCTGGGGCATGCTTGATCTCCAATGACACATCACAAGATCAGTGCCAAAATGAGGAGAGGCTATGGTACACTAGAGGGTGCCCTAGCCAATATGGATGGCTTGCATTGATTGGCCTAGGACTCTACATCATATTCTTCTCACCAGGGATGGGAACAGTTCCATGGGTTGTGAACTCTGAGATCTATCCTCTAAGGTACAGAGGGGTATGTGGAGGAATGGCATCTACCTCAAATTGGGTCTCAAATCTCATTGTGGCCCAGTCCTTTCTGTCCCTCACACAAGCCATTGGGACCTCATACACATTCATGGTGTTCATATTCATCACTATTGCAGCCATTATCTTTGTCATTATTTTTGTGCCTGAAACCAAAGGACTTCCAATTGAGGAAGTGGAGAACATGCTGGAAAGAAGATCTTTGAACTTTAGGTTTTGGCAGACAAGTCATGACTCTAGTGAAGTAGTGCCAAAGCAAAAGAATCATCAGTCAGTTTGA 1749 0.4294 MEGGVPEADVSAFRECLSLSWKNPYVLRLAFSAGIGGFLFGYDTGVISGALLYIRDDFKEVDRKTWLQEAIVSMALAGAIIGASVGGWINDRFGRKKAIVLADTLFFIGSIVMAASINPAILIVGRVFVGLGVGMASMASPLYISEASPTRVRGALVSLNGFLITGGQFLSYVINLAFTSAPGTWRWMLGVAAVPAFTQIILMMLLPESPRWLFRKGKEEEAKEILRRIYPPQDVEDEINALKESVEMEVNEASASDKVSIMKLLKTKTVRRGLYAGMGLQIFQQFVGINTVMYYSPTIVQLAGFASNRVALLLSLVIAGLNAFGSILSIYFIDKTGRKKLLLFSLSGVVVSLVVLTVVFHETTTHSPMVSTIETSHFNNTTCPDYRTALNPAEWDCMKCLKASPECGFCASRANKLLPGACLISNDTSQDQCQNEERLWYTRGCPSQYGWLALIGLGLYIIFFSPGMGTVPWVVNSEIYPLRYRGVCGGMASTSNWVSNLIVAQSFLSLTQAIGTSYTFMVFIFITIAAIIFVIIFVPETKGLPIEEVENMLERRSLNFRFWQTSHDSSEVVPKQKNHQSV 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01251 582 PANTHER GENERAL SUBSTRATE TRANSPORTER 1 570 - -
Cca08g01251 582 Pfam Sugar (and other) transporter 30 365 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca08g01251 582 Pfam Sugar (and other) transporter 448 552 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca08g01251 582 PANTHER PROTON MYO-INOSITOL COTRANSPORTER 1 570 - -
Cca08g01251 582 ProSitePatterns Sugar transport proteins signature 2. 128 153 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca08g01251 582 ProSiteProfiles Major facilitator superfamily (MFS) profile. 29 542 IPR020846 GO:0022857
Cca08g01251 582 Gene3D MFS general substrate transporter like domains 435 560 IPR036259 -
Cca08g01251 582 SUPERFAMILY MFS general substrate transporter 18 550 IPR036259 -
Cca08g01251 582 PRINTS Sugar transporter signature 37 47 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01251 582 PRINTS Sugar transporter signature 123 142 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01251 582 PRINTS Sugar transporter signature 284 294 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01251 582 PRINTS Sugar transporter signature 454 475 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01251 582 PRINTS Sugar transporter signature 477 489 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca08g01251 582 Gene3D MFS general substrate transporter like domains 20 378 IPR036259 -
Cca08g01251 582 CDD MFS_HMIT_like 32 520 - -
Cca08g01251 582 TIGRFAM SP: MFS transporter, sugar porter (SP) family 20 369 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01251 Cca-Chr8 37143970 37149807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01251 1 578 Organic Solute Cotransporters AT1G30220 70.740 0.0 858
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01251 K08150 - gmx:100783605 1038.87