Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01217 ATGGGAATTTCTCGTCCTCAAAAGCCTCATGTTGTTTGCGTGCCATTCCCAGCACAAGGCCATGTAAACCCTTTCATGCAACTAAGCAAACTCCTCCTCTGCACCGGTTTCCACGTAACATTTGTGAACACCGAGTTCAATCACAAGCGTTTGGTTAAGTCTCTCGGACATGAGTTTGTGGAGGGACAACCTCATTTTCGATTCGAGACCATACCAGATGGGTTGCCTCCATCTGACAAAGATGCAACACAAAGCATTGCTGCGCTGTGCGATGCCACTAGAAAACATTGCTACGAGCCTCTCAAAGAGCTCGTGAAGAAGCTCAATGCTTCACACGATGTGCCCGTGGTTAGCTCCATCATATACGATGGGTTAATGGGCTTTGCCGGAAAAGTGGCCAGGGACTTGAATGTTTCTGAGCAACAATTTTGGACAGCCTCAGCTTGTGGCTTAATGGGGTACTTGCAATTCGATGAGATTGTCAAAAGAGCCATTATTCCATTCCAAGACGAAAGGTTCACTGCTGATGGATCTTTGGATACAAATCTCGATTGGATAACTGGAATGAAAAACATTCGAATTAGAGATCTTCCGAGTTTTGTCAGAACCACAACTCTAGATGAAACTAGTTTTATCTTCTTTGGTTTTGAAGCAAAAACCTGTATGAAATCATCTTCAATCATAATTAACACTGTCCAAGAATTGGAAAGTGAAGTCCTTGATGCCCTCATGGCCCAGAACCCAAATATATACAACATTGGTCCACTTCAATTGTTAGGAAGGCATTTTCCTGACAAACACAAGAGCTTCACGGTGAAAGGGTCAAATCTTTGGAAAAATGATTCGGAATGTATCCAATGGCTAGACCAATGGGAACCTTCATCAGTCATTTATGTGAACTATGGAAGTATAACTGTGATGTCTGAACATCATCTGAAAGAATTTGCTTGGGGACTAGCAAATAGCAATCTACCCTTTTTGTGGATAAAGAGGCCAGATTTGGTAATGGGTGAGTCCACACCTTTGCCACAAGACTTCTTAGATGAGGTAAAGGATAGAGGATACATAACAAGTTGGTGCCCCCAAGAAGAAGTGCTTGCTCATCCATCAGTTGGGGTCTTCCTAACTCATTGTGGTTGGAATTCTACAATTGAAGGTATATGTGGAGGTGTACCTATGATTGGTTGGCCTTTCTTTGCTGAACAACAAACAAATTGTAGGTACATATGCACTACTTGGGGCATAGGAATGGATATTAAAGATGATGTAAAAAGAGAGGAGGTGACAACACTTGTGAAAAAAATGATAGAGGGAGAAAAGGGGAAGGAAATGAGGCAAAAGTCTTTGGAGTGGAAAAAGAAAGCAATGCAAGCCACTGATTTGGGAGGAACATCTTATAATGATTTCTATCGATTAGTGAAGGAAGTTCTTCATAGTGATGCTATTTGA 1449 0.4182 MGISRPQKPHVVCVPFPAQGHVNPFMQLSKLLLCTGFHVTFVNTEFNHKRLVKSLGHEFVEGQPHFRFETIPDGLPPSDKDATQSIAALCDATRKHCYEPLKELVKKLNASHDVPVVSSIIYDGLMGFAGKVARDLNVSEQQFWTASACGLMGYLQFDEIVKRAIIPFQDERFTADGSLDTNLDWITGMKNIRIRDLPSFVRTTTLDETSFIFFGFEAKTCMKSSSIIINTVQELESEVLDALMAQNPNIYNIGPLQLLGRHFPDKHKSFTVKGSNLWKNDSECIQWLDQWEPSSVIYVNYGSITVMSEHHLKEFAWGLANSNLPFLWIKRPDLVMGESTPLPQDFLDEVKDRGYITSWCPQEEVLAHPSVGVFLTHCGWNSTIEGICGGVPMIGWPFFAEQQTNCRYICTTWGIGMDIKDDVKREEVTTLVKKMIEGEKGKEMRQKSLEWKKKAMQATDLGGTSYNDFYRLVKEVLHSDAI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01217 482 PANTHER GLYCOSYLTRANSFERASE 5 477 - -
Cca08g01217 482 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 474 - -
Cca08g01217 482 ProSitePatterns UDP-glycosyltransferases signature. 359 402 IPR035595 -
Cca08g01217 482 CDD GT1_Gtf-like 9 456 IPR002213 GO:0008194
Cca08g01217 482 Gene3D Glycogen Phosphorylase B; 10 463 - -
Cca08g01217 482 Gene3D Glycogen Phosphorylase B; 279 457 - -
Cca08g01217 482 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 5 477 - -
Cca08g01217 482 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 295 447 IPR002213 GO:0008194
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01217 Cca-Chr8 35589464 35595719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01217 3 477 Glycosyltransferase AT1G22340 48.847 2.94e-177 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01217 - - gmx:100816809 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01217 08 35589464 35595719 Cca08g01217 08 35589464 35595719 ECH