Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01216 ATGGACTCACTCCACAACACACCAAAGCCCCACGTTGTATGCGTCCCATTCCCAGCACAGGGTCATGTAAACCCCTTCATGCAATTAGCCAAACTCCTCCACTGCGTGGGTTTCCACGTAACGTTCGTGAACACCGAGTTCAACCACAAACGTTTCGTTAAGTCCCATGGACCAGACTTTGTTAAGGGTCTCCCAAGTTTCGTGTTTGAGACCATACCCGATGGGTTGCCACCTTCGGATAAGGACGCAACGCAGGATGTTCCAGCACTGTGTGAATCCACTAGGAGAAGTTGCTATGGTCCGTTGAAGGAGTTGGTGATGAAGCTGAACTCTTCGCACCATGTGCCTAAAGTTAGTTGCATAATTGCTGATGGAACTATGGGCTTTGCTACGAGAGTTGCTAAGGATTTGGGCATCGCAGAGGCTCAACTTTGGACAGCTTCGGCTTGTGGTTTTGTAGGGTATTTGCAATTTGATGAACTCGTTAAAAGAGGCATTGTTCCGTTTCAAGATGAAAATTTTGCTCTTGATGGAACCCTAGATAAAAGTTTGAAATGGATATCTGAAATGAAAGATATTAGACTCAAAGACCTTCCAAGCTTTATAAGAACAACAACTTTGGATGATATTATGTTTGATTTCTTGGGTTCTGAGGCACGAAATTGTTTGAAATCATCTTCAATCATCATTAATTCATTCCAAGACTTGGATAGAGAAGACCTTAATGTCCTTAGGGCCAAAAATCCAAACATATATAACATCGGACCACTTCACTTGCTTGGTCAACATTTTCCTGATAAAGAAAAGGGCTTCAAGTCAAGTGGGTCAAGTTTATGGAAGAACGACTCAAAATGCTTAGAGTGGTTAGACAAATGGGAAGTTGGCTCAGTCATATATGTTAATTACGGAAGTATAACAGTAATGTCAGAACATCACTTGAAAGAATTTGCTTGGGGACTAGCAAATAGCAAGTTACCATTCTTGTGGATAATGAGGGCAGATATAGTAATGGGTGAATCTATAACTTTGCCACAAGAGTTCTTTGATGAGGTCAAGGATAGGGGATACATAACAAGTTGGTGCATCCAAGACCAAGTGCTTTCTCATCCATCAGTTGGGGCCTTTCTAACCCATTGTGGTTGGAATTCTACCCTTGAAAGTATATCTGCAGGTGTGCCTATGATTTGTTGGCCTTTCTTTGCTGATCAACAAACAAATTGCAAGTATATATGCACAAATTGGGGAATAGGGATGGAAATTAACTATGATGTGAAGAGAGAAGAGATATCAATGCTTGTGAAGGAAATGGTGAAGGGAGGAAAAGGAATGGAAATGAAACAAAAATGCTTAGAGTGGAAGAAGAAAGCAATAAAAGCTACTGATATTGGAGGATCATCTTGTAATAATTTTTATAAGTTAATAAGGGAGGTTTTTCATCATAATGTTATTTGA 1452 0.4043 MDSLHNTPKPHVVCVPFPAQGHVNPFMQLAKLLHCVGFHVTFVNTEFNHKRFVKSHGPDFVKGLPSFVFETIPDGLPPSDKDATQDVPALCESTRRSCYGPLKELVMKLNSSHHVPKVSCIIADGTMGFATRVAKDLGIAEAQLWTASACGFVGYLQFDELVKRGIVPFQDENFALDGTLDKSLKWISEMKDIRLKDLPSFIRTTTLDDIMFDFLGSEARNCLKSSSIIINSFQDLDREDLNVLRAKNPNIYNIGPLHLLGQHFPDKEKGFKSSGSSLWKNDSKCLEWLDKWEVGSVIYVNYGSITVMSEHHLKEFAWGLANSKLPFLWIMRADIVMGESITLPQEFFDEVKDRGYITSWCIQDQVLSHPSVGAFLTHCGWNSTLESISAGVPMICWPFFADQQTNCKYICTNWGIGMEINYDVKREEISMLVKEMVKGGKGMEMKQKCLEWKKKAIKATDIGGSSCNNFYKLIREVFHHNVI 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01216 483 Gene3D Glycogen Phosphorylase B; 11 464 - -
Cca08g01216 483 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 475 - -
Cca08g01216 483 Gene3D Glycogen Phosphorylase B; 280 458 - -
Cca08g01216 483 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 6 477 - -
Cca08g01216 483 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 297 438 IPR002213 GO:0008194
Cca08g01216 483 ProSitePatterns UDP-glycosyltransferases signature. 360 403 IPR035595 -
Cca08g01216 483 PANTHER GLYCOSYLTRANSFERASE 6 477 - -
Cca08g01216 483 CDD GT1_Gtf-like 10 459 IPR002213 GO:0008194
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01216 Cca-Chr8 35527242 35532940 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01216 4 478 Glycosyltransferase AT1G22380 50.840 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01216 - - gmx:100794221 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01216 08 35527242 35532940 Cca08g01216 08 35527242 35532940 ECH