Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01213 ATGGGCTCACTTGATACCTCAAAGCCTCATGTTGTATTTGTACCATACCCAGCACAAGGCCATATAAACCCCTTGATGCAACTAGCCAAACTCCTTCATTGTGTGGGTTTCCACATAACATTTGTGAACACTGAGTTCAACCACAACCGTTTTGTTAAGTCCCATGGACCAGACTTTGTTAAGGGTCTCCCAGATTTCATATTTGAGACCATACCCGATGGTTTGCCACCTTCGGATAAGGACGCAACTCAGGATGTTCCAACACTTTCTGATTCTATTAGAAAAAAATGCTATGGTCCTTTCAAGGAGCTGGTGGTGAAGCTCAACTCTTCACATCAAGTGCCTAAAGTTAGTTGCATAATTGCTGATGGGATTATGAGCTTTGCTGCGAGAGTTGCTAAGGATTTGGGCATAGCAGAGGTTCAATTTTGGACCGCATCTGCATGTGGTTTTCTGGGATATTTGCAATACGATGAACTGGTAAAAAGAGGCATTCTTCCATTCAAAGATGAGAATTTTGTCAACGATGGCACCTTGGATAAAAGTTTAAGTTGGATTTCTGGAATGAAAGATATTAGATTGAAAGATCTTCCAAGCTTTATTAGAGTCACCAATTTGGATGATATTATGTTTGATTTCATGGGTTCTGGGTCTCAAAATTGTTTAAGATCATCTGCAATCATCATTAACTCATTCCAAGACTTGGAAGAAGAAGCCCTCGATGCCCTTAGGGCAAATAATCCAAACATATATAACATTGGCCCACTTCAATTGCTTGGTACTAATTTTCCTGATAAAGAAAAGGGCTTCAAGTTAAATGGGTCAAGTTTATGGAAGAATGACTCAAAATGCTTAGAATGGTTAGACAAATGGGAAGTTGGCTCAGTCGTATATGTTAATTACGGAAGTGTAACAGTAATGACCGAGCATCACTTGAAAGAATTTGCTTGGGGACTAGCAAATAGCAAGTTACCATTCTTGTGGATAATGAGGGCAGATGTAGTAATGGGTGAATCTATAACTTTGCCACCAGAGTTCTTTGATGAGATCAAGGGTAGGGGATACATAACAAGTTGGTGCATTCAAGATCAAGTGCTTTCTCATCCATCAATTGGTGTCTTTCTAACCCATTGTGGTTGGAATTCTACACTTGAAAGTATATCTGCGGGTGTACCTATGATTTGTTGGCCTTTCTTTGCTGAGCAACAAACAAATTGCAGGTATGTATACACAACTTGGGGGATAGGCATGGAAATTAATCATGATGTGAAGAGAGAAGAGATAGCAGAGCTTGTGAAGGAAATGATGAAGGGAGAAAAGGGGATGGAAATGAGACAAAAAGGCTTAGAGTGGAAGAAAAAAGCAATAAGAGCTACTAATGTTGGAGGATCATCTTACAACGATTTCTATGATTTCTATAAGTTAATAAAAGAGGTTTTTCATCAAAATGTTATTTGA 1458 0.3903 MGSLDTSKPHVVFVPYPAQGHINPLMQLAKLLHCVGFHITFVNTEFNHNRFVKSHGPDFVKGLPDFIFETIPDGLPPSDKDATQDVPTLSDSIRKKCYGPFKELVVKLNSSHQVPKVSCIIADGIMSFAARVAKDLGIAEVQFWTASACGFLGYLQYDELVKRGILPFKDENFVNDGTLDKSLSWISGMKDIRLKDLPSFIRVTNLDDIMFDFMGSGSQNCLRSSAIIINSFQDLEEEALDALRANNPNIYNIGPLQLLGTNFPDKEKGFKLNGSSLWKNDSKCLEWLDKWEVGSVVYVNYGSVTVMTEHHLKEFAWGLANSKLPFLWIMRADVVMGESITLPPEFFDEIKGRGYITSWCIQDQVLSHPSIGVFLTHCGWNSTLESISAGVPMICWPFFAEQQTNCRYVYTTWGIGMEINHDVKREEIAELVKEMMKGEKGMEMRQKGLEWKKKAIRATNVGGSSYNDFYDFYKLIKEVFHQNVI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01213 485 PANTHER GLYCOSYLTRANSFERASE 5 474 - -
Cca08g01213 485 CDD GT1_Gtf-like 9 458 IPR002213 GO:0008194
Cca08g01213 485 ProSitePatterns UDP-glycosyltransferases signature. 359 402 IPR035595 -
Cca08g01213 485 Gene3D Glycogen Phosphorylase B; 279 457 - -
Cca08g01213 485 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 473 - -
Cca08g01213 485 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 296 439 IPR002213 GO:0008194
Cca08g01213 485 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 5 474 - -
Cca08g01213 485 Gene3D Glycogen Phosphorylase B; 10 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01213 Cca-Chr8 35431122 35438353 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01213 5 469 Glycosyltransferase AT1G22380 51.717 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01213 - - gmx:100794221 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01213 08 35431122 35438353 Cca08g01213 08 35431122 35438353 ECH