Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01175 ATGTTTGAGAGTTTGAAGTTTGAGCTAGACAATATGAAGACCAAGTTTTCCACAGTGAAGCAAAATGAAGAACTCCACAACACTTTAAGAGCCGTGGAAGATCTTCTTCGAAACTTCAACGAAAGAATTTTGGCTGAGGCAGATACAAATAAAAGTGAAACAAAAGGTTTAGAGCTACAAAACCAAAAATCAAGGGAGGAGTTGGTGGGTCTGCAAAAAGCCTCAGATAAGCCATCTCCAAGCCAAGAGGCACCAGACAAGGTTGTGGAAAAAGATGAACCCGTTGATGAAAAGTTGGAGAGATTGAAGTCTGAGATCGATAACATGAAGGCAAAGTTTTCCTCATGGAAGAAAAATGAAGGACTCTGGAACATGTTAGGTGCCCAGCTGGAAGATGTTCTTCAAATCTCCAACACAAAAAGTTTGGATGAAGATGACAAGCATAAAGTTTCTAAGGAGGAGTTGCTGGATAGTGTCGTGAACGCCATTCATAAAAGGATTAAGGACTCAACTAAAAAGCTTGGTGTTAGTCAAAGTGATGAAGTAGTTGATAACTCATCAAGCCAAGCCAAAGCATCTAAACCAGTGCAACACCCCACACTATCTTTATTAAGCCAAAACAATGAGGTGAATCTAGTCTTGAAAAGGTTCCAGGCTAGTTATGATGCCCTTAATCTACATTCAAAACTTTGCTGCTTGTCCCTTTCAGTTTTCCCTGAAAATGTTGTTATAAGGAAAAGACATATAATTTACTGGTGGATTGGAGAAGGTTTTGTAAAAGATACAACAGAGAAAACAGCTGAAGAAGAAGGTGAGGTTGTTTTTGACGAGCTGCTGAATTCATATCTGATTGTACCACATGGTAATAGCAAGTGTCCCATTGTGAATAAATTTAAAATTAGTCCTTGGATCCGTCACATGTTGGTATCATCAGTACTGCTAGGAGAAAATAACCAGCCTTTTGAAAAATTTTCACAAGTAATAACCTCTTCGCATCACAATAATAGTCCTGCTTATTTAGTACTTGACCAAAAAAAAGTTAAAATAAGTGGTGAGTTTGGTACCAAATTTGAACACTGGAGAAGTGTTTTTAATGTTGGTGCGAGTTATCTAAATGTTGAACCTCAATGGATGACTAAAATGAAGAAGATGGTGGTGCTTCAGCTTGGTCGTTGGCACGAATCACCTTTTCATCACATTGAAGTGGATAGTATAAATTTCATGAAAGACTTGAAGGGTCAAAAACATTTAAAGTATCTAAGCCTTCGTGGTATATCAAGAATAACCGAGCTGCCACCCTCCATAGCTCAACTTGTCAACCTACAAATTCTTGATCTCAAGGCTTGTCATAACCTCGAAACACTTCCTGTTGAAATTGCATTATTGAAAAAGCTCACACACTTGGATGCATCTCAGTGTTACTTGTTGGAGAGCATGCCAAAAGGGATTGAGAAGCTCTCTGAGCTCCAAGTACTCAAGGGATTTGTAGTAGGCAATTCTAACAAGAGTCCTAGAATATCAGATCTTGCAGAATTAAAAAAATTAAAACGACTGAGCATACATATTGGAAGTGAAGCTGTGATCCAAGATGAGGATTTTGAAAGCTTAAAATATTTGGAGAAAGTTAAATGTCTCAAAATATCATGGGGTGTGTCGTCTAACTCGAGGTACACGGATATAGTGACCACTCTTCCACCAAGATTGGAAAAGTTGGACCTTGAATGCTTTCCTCAGAAAAAAATTATTATTTCAATTGTACATACTTCAGAATTGAGGAAGCTATATATAAAGGGAGGAAAACTAAAAATTTTGACCCCATTCTATAAATTTTTTAAAGTTGAGATCCTGCGTCTCAAGTACCTAAATGATATGGAAGTTAACCCCAAATATTTGCCACAAATATTTCCATCACTGAAGTACGCAGAAGGGAAACAAGTCTCCAAACAGTCCTTTGAATGGCCGATTAGTGTTGAAGACCAAGTCATAAAGGGTTGA 1995 0.3779 MFESLKFELDNMKTKFSTVKQNEELHNTLRAVEDLLRNFNERILAEADTNKSETKGLELQNQKSREELVGLQKASDKPSPSQEAPDKVVEKDEPVDEKLERLKSEIDNMKAKFSSWKKNEGLWNMLGAQLEDVLQISNTKSLDEDDKHKVSKEELLDSVVNAIHKRIKDSTKKLGVSQSDEVVDNSSSQAKASKPVQHPTLSLLSQNNEVNLVLKRFQASYDALNLHSKLCCLSLSVFPENVVIRKRHIIYWWIGEGFVKDTTEKTAEEEGEVVFDELLNSYLIVPHGNSKCPIVNKFKISPWIRHMLVSSVLLGENNQPFEKFSQVITSSHHNNSPAYLVLDQKKVKISGEFGTKFEHWRSVFNVGASYLNVEPQWMTKMKKMVVLQLGRWHESPFHHIEVDSINFMKDLKGQKHLKYLSLRGISRITELPPSIAQLVNLQILDLKACHNLETLPVEIALLKKLTHLDASQCYLLESMPKGIEKLSELQVLKGFVVGNSNKSPRISDLAELKKLKRLSIHIGSEAVIQDEDFESLKYLEKVKCLKISWGVSSNSRYTDIVTTLPPRLEKLDLECFPQKKIIISIVHTSELRKLYIKGGKLKILTPFYKFFKVEILRLKYLNDMEVNPKYLPQIFPSLKYAEGKQVSKQSFEWPISVEDQVIKG 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01175 664 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED 90 643 - -
Cca08g01175 664 MobiDBLite consensus disorder prediction 178 198 - -
Cca08g01175 664 Coils Coil 22 42 - -
Cca08g01175 664 PANTHER DISEASE RESISTANCE PROTEIN RP 90 643 IPR044974 GO:0006952
Cca08g01175 664 Gene3D - 216 310 IPR036388 -
Cca08g01175 664 MobiDBLite consensus disorder prediction 51 95 - -
Cca08g01175 664 Coils Coil 99 119 - -
Cca08g01175 664 Gene3D Ribonuclease Inhibitor 345 648 IPR032675 -
Cca08g01175 664 SUPERFAMILY L domain-like 351 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01175 Cca-Chr8 33697949 33700398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01175 416 591 Miscellaneous Gene Families AT4G39270 31.073 2.91e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01175 - - ccaj:109811507 1308.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01175 08 33697949 33700398 Cca08g01175 08 33697949 33700398 ECH