Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00967 ATGAGAGAAATAATAAGCATTCATATAGGACAAGCTGGAATTCAGGTTGGTAATTCATGTTGGGAGCTATATTGCCTTGAACATGGCATTCAACAAGATGGAACAATGCCCAGTGATGCCTCAGATGATTCTTCACATGATGCTTTCAACACCTTCTTTAGTGAAATTGGAAATGGCCAGTACGTCCCTAGGGCTTTGTTTGTTGATCTGGAGCCTAGTGTAATTGATGAAATAAGATGTGGTCCTTACAAACAACTCTTTCATCCTGAGCAATTAATTTCTGGCAAGGAAGATGCTGCTAATAACTTTGCAAGGGGACATTACACAGTTGGAAAAGAAATTGAAGAGTTGTGCCTTGACCGTATCAGAAAATTAGCTGACAACTGCACTGGTTTGCAAGGATTCTTGGTTTTCAATGCTGTTGGTGGTGGCACTGGCTCTGGTTTGGGATCATTGCTTTTGGAACGTTTGTCTGTAGATTATGGCAAGAAGTCAAAACTTGGCTTCATTATTTATCCTTCTCCTCAGGTATCTACTGCAGTTGTTGAGCCTTACAACACTGTTCTTTCCAATCATGCTCTTATTGAGCACAGTGATGTAGTTGTGCTTTTGGACAATGAAGCGATATATGACATCTGCAGAAGATCATTAGACATAGAAAGGCCAACTTACACTAACTTGAACCGCTTGATATCTCAAATTATATCTTCATTAACCACATCCTTGAGATTTGATGGTGCAATCAATGTGGACATCTCTGAGTTCCAGACTAACCTTGTGCCATATCCACGCATCCATTTCATGCTCTCATCTTATGCCCCTGTGATATCTGCTGCAAAGGCCTACCATGAGCAGCTATCAGTGCCTGAAATAACCAGAGCCGTGTTTGAGCCATCAAGCATGATGGTCAAGTGTGATCCAAGACATGGCAAGTACATGGCATGCTGCCTCATGTATCGTGGGGATGTTGTTCCCAAAGATGTAAACGTTGCTGTCTCAAATATCAAGACAAAGAGACAGGTTCAGTTTGTTGACTGGTGCCCTACTGGTTTCAAGTGTGGTATCAACTACCAGGCTCCAACAGTGGTACCTGCAGGAGATCTTGCCAAGGTGTCAAGAGCAGTATGCATGATAAGCAACAACACAGCCGTGGCAGAGGTTTTCTCTCGCATTGACCACAAATTTGACCTCATGTTTACCAAAAGGGCATTTGTGCACTGGTATGTGAGTGAAGGCATGGAAGAAGGTGAATTCTCAGAAGCCAGGGAGGATCTTGCTGCCCTTGAAAAGGACTATGAAGAAGTTGGGGATGAAGGAGTAGATGAAGCTGGAAATTACTGA 1341 0.428 MREIISIHIGQAGIQVGNSCWELYCLEHGIQQDGTMPSDASDDSSHDAFNTFFSEIGNGQYVPRALFVDLEPSVIDEIRCGPYKQLFHPEQLISGKEDAANNFARGHYTVGKEIEELCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFIIYPSPQVSTAVVEPYNTVLSNHALIEHSDVVVLLDNEAIYDICRRSLDIERPTYTNLNRLISQIISSLTTSLRFDGAINVDISEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITRAVFEPSSMMVKCDPRHGKYMACCLMYRGDVVPKDVNVAVSNIKTKRQVQFVDWCPTGFKCGINYQAPTVVPAGDLAKVSRAVCMISNNTAVAEVFSRIDHKFDLMFTKRAFVHWYVSEGMEEGEFSEAREDLAALEKDYEEVGDEGVDEAGNY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00967 446 ProSitePatterns Tubulin-beta mRNA autoregulation signal. 1 4 IPR013838 -
Cca08g00967 446 SMART Tubulin_4 49 246 IPR003008 GO:0005525
Cca08g00967 446 CDD alpha_tubulin 2 435 - -
Cca08g00967 446 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 88 101 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 120 128 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 148 160 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 161 172 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 214 226 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 274 289 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 321 342 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 347 360 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 360 379 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 385 401 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Alpha-tubulin signature 422 438 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Tubulin signature 95 106 IPR000217 GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Tubulin signature 108 132 IPR000217 GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Tubulin signature 134 152 IPR000217 GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Tubulin signature 153 174 IPR000217 GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Tubulin signature 178 191 IPR000217 GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Tubulin signature 192 212 IPR000217 GO:0005874|GO:0007017
Cca08g00967 446 PRINTS Tubulin signature 380 408 IPR000217 GO:0005874|GO:0007017
Cca08g00967 446 Coils Coil 418 438 - -
Cca08g00967 446 Gene3D Helix hairpin bin 384 436 IPR023123 -
Cca08g00967 446 PANTHER TUBULIN 1 442 IPR000217 GO:0005874|GO:0007017
Cca08g00967 446 SUPERFAMILY Tubulin C-terminal domain-like 246 437 IPR008280 -
Cca08g00967 446 Gene3D Tubulin/FtsZ, GTPase domain 1 268 IPR036525 -
Cca08g00967 446 Pfam Tubulin/FtsZ family, GTPase domain 3 213 IPR003008 GO:0005525
Cca08g00967 446 Pfam Tubulin C-terminal domain 263 392 IPR018316 -
Cca08g00967 446 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 142 148 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cca08g00967 446 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 244 IPR036525 -
Cca08g00967 446 SMART Tubulin_C_4 248 393 IPR018316 -
Cca08g00967 446 PANTHER TUBULIN ALPHA CHAIN 1 442 - -
Cca08g00967 446 Gene3D - 269 383 IPR037103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00967 Cca-Chr8 23117609 23122994 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00967 K07374 - gmx:100780531 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00648 07 9422256 9425928 Cca08g00967 08 23117609 23122994 PCT