Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00881 ATGGCTCGCACAAAGCAAACTGCTCGCAAGTCCACCGGCGACAAGGCGCCGAGGAAGCAGCTGGCGACGAAGGCCGCCAGAAAGTCCGCTCCGACCACTGGCGGCGTGAAGAAGCCCCACCGATTCAGGCCCGGCACGGACTTCAAGACCGACCTCCGATTCCAGAGCTCCGCCGTGTCGGCGCTCCAGGAGGCCGTCGAGGCCTACCTCGTTGGTCTCTTTGAGGACACCAACCTCTGCGCCATTCACGCCAAGCGCGTCACCATCATGCCCAAGGACATTCAACTAGCTAGGCGCATCAGGGGCGAGCATGCTTAA 318 0.6258 MARTKQTARKSTGDKAPRKQLATKAARKSAPTTGGVKKPHRFRPGTDFKTDLRFQSSAVSALQEAVEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGEHA 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00881 105 PANTHER HISTONE H3 46 105 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca08g00881 105 PANTHER HISTONE H3 1 46 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca08g00881 105 PANTHER - 46 105 - -
Cca08g00881 105 PANTHER - 1 46 - -
Cca08g00881 105 Pfam Core histone H2A/H2B/H3/H4 48 101 IPR007125 GO:0003677
Cca08g00881 105 Gene3D Histone, subunit A 46 105 IPR009072 GO:0046982
Cca08g00881 105 PRINTS Histone H3 signature 17 31 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca08g00881 105 PRINTS Histone H3 signature 3 17 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca08g00881 105 PRINTS Histone H3 signature 34 55 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca08g00881 105 SUPERFAMILY Histone-fold 2 103 IPR009072 GO:0046982
Cca08g00881 105 MobiDBLite consensus disorder prediction 1 49 - -
Cca08g00881 105 Gene3D Histone, subunit A 2 45 IPR009072 GO:0046982
Cca08g00881 105 ProSitePatterns Histone H3 signature 1. 15 21 IPR000164 GO:0000786|GO:0003677|GO:0030527
Cca08g00881 105 SMART h35 8 105 IPR000164 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00881 Cca-Chr8 19828433 19828843 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00881 K11253 - gmx:100306416 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00881 08 19828433 19828843 Cca08g00881 08 19828433 19828843 ECH