Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00765 ATGAAACCTTTTCCTCCGCGGACTCACCAATTTCCCAAGTTACAAGCCTTAGTTTCTTCAATTCGAAAATCTTTAGGATCCCCACAAAACCCAGTTCTTATTTTGGAACTTCTAGGCAAAGCGTTGGATCAATACCCAGATATCAAAACCTTGAAAAATGTCCATTCCAAAGTTTTTAATCTCAACTTTCACGAAAACCCGTCTCTGGGGATCAAACTCATGCGGGCCTATGCTGCCTGTGGAGAACCCGGGTTGGCACGCAAGGTGTTTGATGAAATTCCAGAGAGGAATGTTGTTTTCTATAATGTAATGATTAGAAGCTATGTGAATAACCATCGGTACAATGATGCATTGCTTGCTTTCAGGGACATGCTTCATGGAGCTGTGATGAAGGTTCAGCTTGATTCGAATTTGTTTGTTGGGAATGGTCTCATTGCTTTGTATGGGAAGTGTGGTTGCTTGCTGGAGGCGCGGCATGTTCTTGATGAAATGCCAAGCAGGGATGTTGTTTCATGGAACTCGATGGTTGCTGGGTATGCACAGAATATGCGGTTCGATGATGCTTTGGAGATTTGCCGAGAAATGGAGGGTCTGAGGCAGAAACCAGATGCAGGTACAATGGCTAGTCTCCTGCCAGCAGTAACTAACACTTCGTCAGAAAATGTTCTGTATGTTAAGGAGATGTTTGTGAATATGGAGAAGAAAAGTTTGGTTTCATGGAATGTGATGATAACTGTATATATGAAAAACTCAATGCCTGGAAAAGCTATTGATCTATATTTACAAATGGAGAATTTTGAAGTGGAACCAGATGCAATCACTTGTGCTAGTGTTCTTCCAGCATGTGGGGATCTCTCAGCTTTGTTGTTAGGAAGGAGGATTCATGAATATGCTGAGAGGAAGAAGCTATGTCCAAATTTGCTTCTTGAGAATGCACTGATAGACTTGTATGCTAGGTGTGGATGTCTAGAAGAAGCGAAAAAAGTGTTTGACAGAATGAAGTTTCGTGATGTTGCATCATGGACTTCCTTGATATCTGCCTACGGTATGACTGGACAAGGCCATAAAGCTGTGACACTCTTTACTGAAATGCTAAATTCAGGTCAAACTCCAGATTCTATTGCCTTCGTCGCAATTCTCTCGGCTTGTAGCCATTCGGGATTACTAAATGAAGGAAAGTTTTACTTTAAGCAGATGACAGATGATTACAGAATAACACCAAAAATTGAGCACTTTGCTTGTTTGGTGGATCTTTTGGGACGAGCTGGGCAAGTAGATGAGGCCTATAACTTCATCAAACAGATGCCAATGGAACCTAATGAAAGAGTTTGGGGGGCTCTGCTTAGCTCGTGCCGGGTGTACTCCAACATGGATATTGGACTTCTAGCAGCTGACAAACTACTTCAGTTGGCTCCTGAGCAATCAGGTTACTATGTATTGTTATCTAATATTTATGCAAAGGCTGGTAGATGGACAGAAGTAACAGCTATTCGATCCCTAATGAAGAGGAGAAGAATTCGGAAAACGCCTGGCATCAGCAATGTTGAGCTGAATAATCAGGTCCACACCTTTCTTGCCGGTGACACGTCACACCCACAATCAAAGGAGATATATGAAGAGCTAGGTGTGCTGGTGGGGAAGATGAAAGAGTTGGGTTATGTCCCTGAGACAGATTCTGCTCTTCATGATGTGGAGGAGGAGGATAAAGAATGCCATCTAGCTGTTCACAGTGAGAAATTAGCTATTGTATTTGCTATTCTCAATACCAGGGAGTCCCCAATCAGAATCACCAAAAACCTTCGTGTTTGTGGAGATTGTCATATTGCTGCCAAGCTTATCTCCAAGATAGTTCAACGTGAAATTGTTGTTAGGGACACCAATCGATTCCACCATTTTAAGGATGGTATATGCTCTTGTGGTGATTATTGGTGA 1932 0.4229 MKPFPPRTHQFPKLQALVSSIRKSLGSPQNPVLILELLGKALDQYPDIKTLKNVHSKVFNLNFHENPSLGIKLMRAYAACGEPGLARKVFDEIPERNVVFYNVMIRSYVNNHRYNDALLAFRDMLHGAVMKVQLDSNLFVGNGLIALYGKCGCLLEARHVLDEMPSRDVVSWNSMVAGYAQNMRFDDALEICREMEGLRQKPDAGTMASLLPAVTNTSSENVLYVKEMFVNMEKKSLVSWNVMITVYMKNSMPGKAIDLYLQMENFEVEPDAITCASVLPACGDLSALLLGRRIHEYAERKKLCPNLLLENALIDLYARCGCLEEAKKVFDRMKFRDVASWTSLISAYGMTGQGHKAVTLFTEMLNSGQTPDSIAFVAILSACSHSGLLNEGKFYFKQMTDDYRITPKIEHFACLVDLLGRAGQVDEAYNFIKQMPMEPNERVWGALLSSCRVYSNMDIGLLAADKLLQLAPEQSGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVGKMKELGYVPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTRESPIRITKNLRVCGDCHIAAKLISKIVQREIVVRDTNRFHHFKDGICSCGDYW 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00765 643 Gene3D Tetratricopeptide repeat domain 44 131 IPR011990 GO:0005515
Cca08g00765 643 Gene3D Tetratricopeptide repeat domain 132 219 IPR011990 GO:0005515
Cca08g00765 643 Gene3D Tetratricopeptide repeat domain 288 388 IPR011990 GO:0005515
Cca08g00765 643 Gene3D Tetratricopeptide repeat domain 220 287 IPR011990 GO:0005515
Cca08g00765 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Cca08g00765 643 Pfam DYW family of nucleic acid deaminases 552 643 IPR032867 GO:0008270
Cca08g00765 643 Pfam PPR repeat 170 197 IPR002885 -
Cca08g00765 643 Pfam PPR repeat 99 125 IPR002885 -
Cca08g00765 643 Pfam PPR repeat 311 336 IPR002885 -
Cca08g00765 643 Pfam PPR repeat 142 168 IPR002885 -
Cca08g00765 643 Pfam PPR repeat 414 436 IPR002885 -
Cca08g00765 643 Pfam PPR repeat 73 98 IPR002885 -
Cca08g00765 643 Gene3D Tetratricopeptide repeat domain 389 526 IPR011990 GO:0005515
Cca08g00765 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Cca08g00765 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Cca08g00765 643 Pfam E+ motif 521 541 IPR046849 -
Cca08g00765 643 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 18 125 - -
Cca08g00765 643 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 124 636 - -
Cca08g00765 643 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 124 636 - -
Cca08g00765 643 Pfam E motif 454 516 IPR046848 -
Cca08g00765 643 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 18 125 - -
Cca08g00765 643 Pfam PPR repeat family 337 384 IPR002885 -
Cca08g00765 643 Pfam PPR repeat family 236 282 IPR002885 -
Cca08g00765 643 TIGRFAM PPR: pentatricopeptide repeat domain 340 372 IPR002885 -
Cca08g00765 643 TIGRFAM PPR: pentatricopeptide repeat domain 238 272 IPR002885 -
Cca08g00765 643 TIGRFAM PPR: pentatricopeptide repeat domain 170 203 IPR002885 -
Cca08g00765 643 TIGRFAM PPR: pentatricopeptide repeat domain 311 338 IPR002885 -
Cca08g00765 643 TIGRFAM PPR: pentatricopeptide repeat domain 100 125 IPR002885 -
Cca08g00765 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 336 IPR002885 -
Cca08g00765 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00765 Cca-Chr8 14989729 14991810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00765 62 643 Glycoside Hydrolase AT3G49170 36.433 1.79e-128 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00765 - - gmx:100787841 1163.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00765 08 14989729 14991810 Cca08g00765 08 14989729 14991810 ECH