Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00760 ATGCGCCACGCGCCACTATGTGCTACGAGCCACCATGAACGCTGTGGTGCTGATATACATGTCATCGTAAAAATTGAAAGTGCCGACTCTATACCAAACTTGCATTCAATTATCACCGCATCTGATGGGGCTATGGTTGCCAGAGGAGATCTTGGTGCTGAGCTCCCTATTGAAGAGGTTCCACTTTTGCAGGAAGAGATTATCAACTTGTGTCGTAGCATGGGAAAGGCTGTTATTGTGGCAACAAATATGCTAGAAAGCATGATTGTTCACCCAACTCCAACCAGAGCAGAGGTATCAGATATAGCAATAGCTGTTCGAGAAGGTTCCGATGCTATAATGTTGTCGGGAGAAACAGCTCATGGGAAGCAAACGGTAGCATTGCGGACAGAAGCTACTATACCAGGTGGTCAAATGCCACCTAACATTGGTCAAGTGTTCAAGAACCACATGAGCGAGATGTTTGCATACCATGCAACTATGATGTCTAATACCCTTGGAACCTCAACTGTTGTCTTCACTAGAACGGGTTTCATGGCTATCCTACTGAGCCATTATCGTCCTTCTGGCTCCATATTTGCTTTTACAGATGAGAAGAGGGTGCGGCAGAAGCTCGCTTTGTATCAAGGAGTCTGTCCCACATACATGGAATTCTGTGACGATTCTGAAGCTACTTTCTCAAGAGCCTTGGATTTGCTGCAGaagcaaggaatggtgaaggaaggagaagaagtagcacttgtacaaagtggtaggcaacccatatggaggttccaatccacacacaatatccaggttaggaaagtgtaa 810 0.3975 MRHAPLCATSHHERCGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDAIMLSGETAHGKQTVALRTEATIPGGQMPPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRTGFMAILLSHYRPSGSIFAFTDEKRVRQKLALYQGVCPTYMEFCDDSEATFSRALDLLQKQGMVKEGEEVALVQSGRQPIWRFQSTHNIQVRKV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00760 269 PANTHER PYRUVATE KINASE 13 269 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca08g00760 269 Gene3D - 142 269 IPR036918 -
Cca08g00760 269 PANTHER PLASTIDIAL PYRUVATE KINASE 2 13 269 - -
Cca08g00760 269 ProSitePatterns Pyruvate kinase active site signature. 19 31 IPR018209 GO:0004743|GO:0006096
Cca08g00760 269 SUPERFAMILY PK C-terminal domain-like 147 269 IPR036918 -
Cca08g00760 269 PRINTS Pyruvate kinase family signature 98 116 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca08g00760 269 PRINTS Pyruvate kinase family signature 73 97 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca08g00760 269 PRINTS Pyruvate kinase family signature 117 133 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca08g00760 269 PRINTS Pyruvate kinase family signature 21 47 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca08g00760 269 PRINTS Pyruvate kinase family signature 48 72 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca08g00760 269 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 11 127 IPR015813 GO:0003824
Cca08g00760 269 Pfam Pyruvate kinase, barrel domain 15 124 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cca08g00760 269 Pfam Pyruvate kinase, alpha/beta domain 157 249 IPR015795 -
Cca08g00760 269 Gene3D - 12 126 IPR040442 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00760 Cca-Chr8 14917917 14921318 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00760 K00873 - gmx:100815822 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00760 08 14917917 14921318 Cca08g00760 08 14917917 14921318 ECH