Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00736 ATGCTTGCACTCACTGATTCTCCTCTACTTATTGCTAAAACATTTGAAGCAATAAAAATACCAACAAGTACACGAGGCACTGTGGTATGTGCTGCAAAAGGTCCAAGACCTAGATATCCCCGAGTTTGGAAGACCAATAAAAAAATCGGGACCATTTCCAAGGCTGCTAAGCTAGTTAATTCTATTAAGGAACTGTCAAATGTCAAAGAGGAAGTTTACGGGGCTCTTGATTCATATGTTGCTTGGGAGTTAGAGTTCCCTTTAATCACGGTGAAAAAGGCACTCAAAACCTTAGAATTTGAACAAGAGTGGAAGCGGGTAATACAGGTAACAAAATGGATGTTGAGCAAAGGTCAAGGAAAGACAATGGGAAGTTATTTCACTTTACTTAATGCTTTAGTAGAAGATGACCGTCTTGATGAAGCTGAAGAGCTTTGGACAAAGTTATTAATGCAGTACATGGAAAGTTTGCCTCGTAGATTTTTTGATAAAATGATATCTATCTACCGTAAAAGGGACATGCATGATAAGATGTTTGAGATATTTGCAGACATGGAGGAGCTTGGTCTTCGACCTAGTATTTCTGTGGTCTCAATGATTGGAGAAGCCTTCAAAGAGCTGGGTATGCTAGACAAATACCAGAAGTTACATGCAAAATATCCACCACAACAATGGGAATATAGATACATCAGAGGAAAGCGTGTAAAAGTCAAAGTGCAAGTTCAGTCTAATCAGGTCAACACATACTTAAAAAGGCATGAGAATGTTGAAACAAACTTGGACTTAAACAATAATTATAAATCTGAAGAAGAGACTTCAGAGATAATTGATGATCAACAACTCAGACAGGATGCAGATATAATATCCATGGAACCTGAACAAATTTCAAATGATATGTATGACAGTATGGAACCTATTTTGGATGTGTAA 930 0.3742 MLALTDSPLLIAKTFEAIKIPTSTRGTVVCAAKGPRPRYPRVWKTNKKIGTISKAAKLVNSIKELSNVKEEVYGALDSYVAWELEFPLITVKKALKTLEFEQEWKRVIQVTKWMLSKGQGKTMGSYFTLLNALVEDDRLDEAEELWTKLLMQYMESLPRRFFDKMISIYRKRDMHDKMFEIFADMEELGLRPSISVVSMIGEAFKELGMLDKYQKLHAKYPPQQWEYRYIRGKRVKVKVQVQSNQVNTYLKRHENVETNLDLNNNYKSEEETSEIIDDQQLRQDADIISMEPEQISNDMYDSMEPILDV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00736 309 PANTHER OS01G0757700 PROTEIN 4 279 - -
Cca08g00736 309 Pfam PPR repeat 165 190 IPR002885 -
Cca08g00736 309 TIGRFAM PPR: pentatricopeptide repeat domain 163 193 IPR002885 -
Cca08g00736 309 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Cca08g00736 309 PANTHER OS01G0757700 PROTEIN 4 279 IPR044646 -
Cca08g00736 309 Gene3D Tetratricopeptide repeat domain 53 227 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00736 Cca-Chr8 13884966 13888344 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00736 - - gmx:100781797 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00736 08 13884966 13888344 Cca08g00736 08 13884966 13888344 ECH