Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00731 ATGATATTCGGAGAAGATGAACACCCTTGTTGTGAGTTTAGTTTCTGGTTGTTTCTGATTATATGTCTGGTGCTTGTGTCACTGGCAGGCATTGCATCAGGTCTAGCTCTAGGACTACTGTCCTTCAGCCAAGTTGATCTTGAGGTCCTCATTAAGGCTGGTCTTCCAAAAGACAGAAAGCATGCAGAAAGGATTCAACCTTTTGTAAAGAAAGGACATTTTGTCCTATGTACCCTTCTCCTAGGAAAATCACTTGCCATGGAGGCACTGCCCCTTTTTATGGATGCAATCCTCCCATCTTGGTTTACTATTCTCATGTCAGCACCCTTGGTGACCGTGTTTGCAGAGATTTTACCTCAAGCTGTGTGCTCTAGATATGGACTAACTTTAGGAGCAAAAATGGCTCCTATTGTTCAACTGCTTCTGCTATTCTTTTTCCCTATAACCTATCCTGCTAGTAAGGTAAATtatatgttatGGAAAGAGCATTCAGTTCTTCTCAGAAGGTCAGAGTTGAAGACATTTGTGGACTTACATGCAAATGAGGCAGGGAAGGGTGGAGAATTGTCACATCATGAAACTTCTATAATCACAGGTGCTATGGATTTGACTCAGAAGACAGCTAAAGATGCCATGACACCCATATCTGAAACTTTCTCTCTCGATATAAATTCAAAACTTGACATGCATACAATGACACAAATAATGAGCAAAGGTCACAGTCGAATACCTATACATTCTGGACACCCAAGAAATATTATTGGCCTCATATTGGTTAAAAATTTGATGTTTTGCCGCCCAGAAGATGAGACACCAATAAAGAATTTGATTATTAGGAAAATTCCAAGGGTTTATGAAAGTTGGCCACTATATGAAATATTGAATCAATTCCAGAAGGGTCACAGCCATATGGCTATTGTCTTGGAATCCAACAAAGACACAGAGAGCACTACAGTTCATGCTGTCGGTGCACCTACCTTTTTGAATATAATTACTCATAAAAAATCAAACCCAGCTCAAGTTGCTGGAGAATCTGATTCATCCTTTGTCCTGGAAATAAGTCAGAGAAGTTCAGTTCATGAATCTGGTTTAAACTCTAGCGACGCGGAATTTCATAGTCCAACATTAAAAAATATGATGGAACTAGAAAGTGAAGCAGTGGAACAAGAAAATGGAGATTTCTCACAAGAACAAGTAGAGTCTCTTCCGGATGTTATAGATGAGGAAGTTATTGGCATCATCACAATGGAAGATGTCATGGAGGAACTGTTACAGGGAGACATACTGGATGAAACTGATGAATATGTTCATGTTCAAAAGAACATTAGAATTAACCTGCTGCAATCACTAAGGTCACAATCAAGATCATCAAGGAGGGCTTCTGGTTCTGGTCATCGTTAA 1401 0.3947 MIFGEDEHPCCEFSFWLFLIICLVLVSLAGIASGLALGLLSFSQVDLEVLIKAGLPKDRKHAERIQPFVKKGHFVLCTLLLGKSLAMEALPLFMDAILPSWFTILMSAPLVTVFAEILPQAVCSRYGLTLGAKMAPIVQLLLLFFFPITYPASKVNYMLWKEHSVLLRRSELKTFVDLHANEAGKGGELSHHETSIITGAMDLTQKTAKDAMTPISETFSLDINSKLDMHTMTQIMSKGHSRIPIHSGHPRNIIGLILVKNLMFCRPEDETPIKNLIIRKIPRVYESWPLYEILNQFQKGHSHMAIVLESNKDTESTTVHAVGAPTFLNIITHKKSNPAQVAGESDSSFVLEISQRSSVHESGLNSSDAEFHSPTLKNMMELESEAVEQENGDFSQEQVESLPDVIDEEVIGIITMEDVMEELLQGDILDETDEYVHVQKNIRINLLQSLRSQSRSSRRASGSGHR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00731 466 Gene3D - 193 333 IPR046342 -
Cca08g00731 466 ProSiteProfiles CNNM transmembrane domain profile. 11 193 IPR002550 -
Cca08g00731 466 Pfam Cyclin M transmembrane N-terminal domain 20 190 IPR002550 -
Cca08g00731 466 CDD CBS_pair_CorC_HlyC_assoc 207 308 IPR044751 -
Cca08g00731 466 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 5 462 IPR045095 GO:0010960
Cca08g00731 466 SUPERFAMILY CBS-domain pair 196 311 IPR046342 -
Cca08g00731 466 PANTHER CBS DOMAIN PROTEIN 5 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00731 Cca-Chr8 13809955 13814718 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00731 K16302 - gmx:100791387 749.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00731 08 13809955 13814718 Cca08g00731 08 13809955 13814718 ECH