Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00713 ATGACGGAAGTGGTACTGCATATATATGATGTGACAAATAGTGGATCCGAGAAAACTAACAACACCATTGTTCAGATCAACAAGATCTTCAAGGATGGGATTGGTCTCGGTGGCATCTTCCATAGCGCTGTGCAGGTTTATGGAGAAGATGAATGGTCATTTGGATTCTGTGAGCAGGGTACCGGAGTTTTTAGTTGCCCGTCTGGAAAGAATCCAATGTATACATATCGTGAATGCATTGTTCTGGGGAAAACAAACTCTTCCATTTTCAAGGTAAATCAGATACTGAGAGAACTCAGTAGAGAGTGGCCAGGGAGTTCATATGATCTGCTTGCCAAAAACTGCAATCACTTCTGTGATGAATTCTGTGAAAGGCTTGGTGTACAAAAGCTTCCAGGTTGGGTCAATAGGTTTGCCAATGCTGGTGATACTGCTATGGAAGTGGCTGGAAATACAGCATTACGGGTAAGAAACAATATTCAGAATTCTCTAACTTGTCTTAACTACATAGAATTGTTCTCTTCACAAGCGGGCTGTTCTTGTGATTTTGGCTCGAGCACTTCTATCACGTAG 573 0.4206 MTEVVLHIYDVTNSGSEKTNNTIVQINKIFKDGIGLGGIFHSAVQVYGEDEWSFGFCEQGTGVFSCPSGKNPMYTYRECIVLGKTNSSIFKVNQILRELSREWPGSSYDLLAKNCNHFCDEFCERLGVQKLPGWVNRFANAGDTAMEVAGNTALRVRNNIQNSLTCLNYIELFSSQAGCSCDFGSSTSIT 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00713 190 Gene3D PPPDE domains 1 168 IPR042266 -
Cca08g00713 190 SMART DUF862_2a 2 155 IPR008580 GO:0008233
Cca08g00713 190 ProSiteProfiles PPPDE domain profile. 2 148 IPR008580 GO:0008233
Cca08g00713 190 Pfam PPPDE putative peptidase domain 3 146 IPR008580 GO:0008233
Cca08g00713 190 PANTHER PPPDE PUTATIVE THIOL PEPTIDASE FAMILY PROTEIN-RELATED 1 162 - -
Cca08g00713 190 PANTHER DESUMOYLATING ISOPEPTIDASE 1 162 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00713 Cca-Chr8 13463292 13467670 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00713 - - cpap:110810316 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00713 08 13463292 13467670 Cca08g00713 08 13463292 13467670 ECH