Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca08g00710 | ATGTTGTCTCTCAGGCTAACCTCTTTCACTCACCTCCTCTCCCCGCCCTCTTCCGCCGCCATCGCTCGCCGTTCTCCGGCGATTCTGCGGCGGCGCCACCACCTCCGCCCGCGCCCGCTCGCTGCCTCCTTCTCCTCCCAGAGTGCGGCGGCGGAGACCAAGGACCGAGTCGAGAACTCGAAGAGCCGAGTCGCGGAGCGAGTCATCACGCCCCGCTCGCAGGACTTCAACGCGTGGTACCTCGACGTCATCGCCAATGCCGAATTGGCGGATTACGGTCCGGTTCGCGGCACAATGGTCATTCGCCCCTACGGTTACGCCATTTGGGAAGCTATTCAGGAGTATTTGAATGTGAAGTTCAAGGAGACTGGGCATAGTAACATGTATTTTCCGCAGTTTATCCCATATTCATTTATAGAAAAAGAAGCAAGTCATGTTGAGGGATTTAGTCCCGAGTTAGCCCTAGTGACAATTGGGGGTGGAAAGGAACTTGAAGAGAAACTCGTGGTCCGGCCTACAAGCGAAACCATTGTGAATCATATGTTTACTCAATGGATCCATAGCTACCGTGATCTTCCTCTCTTGATAAATCAGTGGGCAAATGTGACAAGATGGGAGATGCGCACTAAACCGTTTGTCAGAACCCTTGAATTTCTTTGGCAAGAAGGACATACTGCTCATGCAACTCCAGAGGAGGCAGAAAAGGAGGCTATACAGATGATTGACATCTATACCAGATTTGCATTTGAGCAAGCTGCAATACCTGTTATTACAGGTCGAAAATCTAAAGTGGAAACATTTGCTGGTGCTTGTAAGACCTATACGATTGAGGCTATGATGGGTGACAAGAAAGCATTACAAGCTGGAACCAGTCATAACCTTGGGCAAAACTTTGCCCGTGCCTTTGGAACACAGTTCACAGATGAAAATGGACTAAGGGAACACGTTTGGCAGACATCATGGGCAATTAGTACCCGTTTTGTTGGAGGCATCATCATGACGCATGGAGATGATGCGGGCCTAATGCTTCCCCCAAAGATTGCACCTATTCAGGTGGTAATTGTACCCATTTGGAAGAAGGATGATGAAAAGGGGGCAGTTCTAAATGCAGCATCATCTGTAAAAGATGCTCTTCAAAGATCTGGAATTAAAGTTAAACTTGATGACTCAGATCAAAGAACTCCTGGATGGAAATTCAATTTCTGGGAAATGAAGGGAGTTCCTCTTAGAATTGAAATTGGTCCTCGTGATGTGGCTAGTGGAAGTGTGGTGATATCCAGGAGAGATATCCCTGGGAAGCAAGGGAAAGTATTTGGAATCTCCATGGAGCCTTCAAATCTGGAAGCTTATGTTAAAGACAAGTTGGATGAGATACAGTCATCTCTTTTGGAAAGGGCAATTGCATTTCGAGACAGTAATATTATAGATGTGAGCACATATGATGATCTTAAAGCTGCAATATCACAAGGCAAATGGGCACGTGGCCCTTGGTCTGCTAGTGATGAAGATGAGTTAAAAGTCAAAGAGGAAACAGGAGCAACTATTAGGTGCTTTCCTTTTGAACAGCCACAAGGGATTAAAAGGTGCTTGATGACCGGCAACCCTGCTGAAGAAGTGGCTATTTTTGCCAAATCTTACTAA | 1641 | 0.4686 | MLSLRLTSFTHLLSPPSSAAIARRSPAILRRRHHLRPRPLAASFSSQSAAAETKDRVENSKSRVAERVITPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWEAIQEYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLLINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEAIQMIDIYTRFAFEQAAIPVITGRKSKVETFAGACKTYTIEAMMGDKKALQAGTSHNLGQNFARAFGTQFTDENGLREHVWQTSWAISTRFVGGIIMTHGDDAGLMLPPKIAPIQVVIVPIWKKDDEKGAVLNAASSVKDALQRSGIKVKLDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVASGSVVISRRDIPGKQGKVFGISMEPSNLEAYVKDKLDEIQSSLLERAIAFRDSNIIDVSTYDDLKAAISQGKWARGPWSASDEDELKVKEETGATIRCFPFEQPQGIKRCLMTGNPAEEVAIFAKSY | 546 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca08g00710 | 546 | Gene3D | Bira Bifunctional Protein; Domain 2 | 70 | 344 | IPR045864 | - | |
| Cca08g00710 | 546 | Gene3D | - | 345 | 468 | IPR036621 | - | |
| Cca08g00710 | 546 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 96 | 344 | IPR006195 | - | |
| Cca08g00710 | 546 | SUPERFAMILY | Class II aaRS and biotin synthetases | 75 | 338 | IPR045864 | - | |
| Cca08g00710 | 546 | CDD | ProRS_core_arch_euk | 75 | 334 | IPR033721 | - | |
| Cca08g00710 | 546 | SUPERFAMILY | C-terminal domain of ProRS | 475 | 546 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Cca08g00710 | 546 | Gene3D | - | 475 | 546 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Cca08g00710 | 546 | TIGRFAM | proS_fam_I: proline--tRNA ligase | 70 | 546 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Cca08g00710 | 546 | SUPERFAMILY | Class II aaRS ABD-related | 340 | 472 | - | - | |
| Cca08g00710 | 546 | Hamap | Proline--tRNA ligase [proS]. | 69 | 546 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Cca08g00710 | 546 | PANTHER | PROLYL-TRNA SYNTHETASE | 3 | 546 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Cca08g00710 | 546 | Pfam | Prolyl-tRNA synthetase, C-terminal | 480 | 546 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Cca08g00710 | 546 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 163 | 332 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Cca08g00710 | 546 | PRINTS | Prolyl-tRNA synthetase signature | 127 | 145 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Cca08g00710 | 546 | PRINTS | Prolyl-tRNA synthetase signature | 168 | 179 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Cca08g00710 | 546 | PRINTS | Prolyl-tRNA synthetase signature | 198 | 206 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Cca08g00710 | 546 | PRINTS | Prolyl-tRNA synthetase signature | 207 | 218 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Cca08g00710 | 546 | PANTHER | BNAC09G28510D PROTEIN | 3 | 546 | - | - | |
| Cca08g00710 | 546 | CDD | ProRS_anticodon_zinc | 340 | 546 | - | - | |
| Cca08g00710 | 546 | Pfam | Anticodon binding domain | 351 | 453 | IPR004154 | - | |
| Cca08g00710 | 546 | SMART | ProRS_C_1_2 | 480 | 546 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca08g00710 | Cca-Chr8 | 13410000 | 13416506 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca08g00710 | K01881 | - | gmx:100788013 | 1045.03 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca08g00710 | 08 | 13410000 | 13416506 | Cca08g00710 | 08 | 13410000 | 13416506 | ECH |