Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00691 ATGTGGCCATTTAGCAGAAAAGGAGCTTCTGGTTTTTCATCATCTTCTACTGCTGAGGAAGTTACTGAGGGAGTTGATGGTACTGGTCTCACTGCTATTGTTACAGGAGCATCCAGTGGTATTGGTGCTGAGACTGCTCGTGTTCTTGCCTTACGTGGTGTTCATGTTGTTATGGGAGTGATAGAAATGATTGATGCCAAAAATGTTAAGAAAGCAATACTTAATGAGATTCCTACAGCTAAAATTGATATCATGGAGTTAGATCTTAGTTCAATGACATCGATTCGAAATTTCGTGTCCAAATTTACTTCATATGGTATTTCATTGAATATTTTGATAAATAATGCAGGGATTTGTGCAACCCCTTTCACACTATCCAAGGATCGCATTGAACTTCAATTTGCTATAAATTATATAGGGCATTTTCTTTTAACAAACATGTTGTTGGATAATATGAAGAGAACAACACAAGAAAGTAAGATACAAGGAAGAATTGTTAATGTTTCATCAGTTGGTCATCGTTTAACATATCGTGAAGGAATCCTATTTGACAAAATTAATGATCAATCAAGTTATAACAGCTGGCGTGCATATGGGCAATCAAAGTTGGCCAACATTTTACATGCCAATGAACTAGCAAGACGTCTCAAGGAAGAAGAAATAAATATTACCGTTAATTCTCTTCATCCAGGATCCACTATCACTAATATTTACATGGGCAATCGTTTGTTGAAAGGGATATTCAATTTGCTAGGGCCATTTGTAGTTGATAAGCTTGCGGGATTCTTGGTGAAAAATGTCCAGCAAGGAGCAGCAACAACATGCTATGTAGCATTACACCCACAAGTGAGTGGAATTAGCGGAAAGTATTTTGCAGATAATAATCTTGCTGAGCCATACTCACATGGAAAGAACATGGATTTGGCCAAGAAGTTATGGGATTTTAGTATGAGTTTGATCGAGTAA 966 0.3696 MWPFSRKGASGFSSSSTAEEVTEGVDGTGLTAIVTGASSGIGAETARVLALRGVHVVMGVIEMIDAKNVKKAILNEIPTAKIDIMELDLSSMTSIRNFVSKFTSYGISLNILINNAGICATPFTLSKDRIELQFAINYIGHFLLTNMLLDNMKRTTQESKIQGRIVNVSSVGHRLTYREGILFDKINDQSSYNSWRAYGQSKLANILHANELARRLKEEEINITVNSLHPGSTITNIYMGNRLLKGIFNLLGPFVVDKLAGFLVKNVQQGAATTCYVALHPQVSGISGKYFADNNLAEPYSHGKNMDLAKKLWDFSMSLIE 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00691 321 PANTHER RETINOL DEHYDROGENASE 2 320 - -
Cca08g00691 321 Pfam short chain dehydrogenase 31 173 IPR002347 -
Cca08g00691 321 Gene3D - 22 321 - -
Cca08g00691 321 CDD retinol-DH_like_SDR_c_like 29 313 - -
Cca08g00691 321 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 320 - -
Cca08g00691 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 297 IPR036291 -
Cca08g00691 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Cca08g00691 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Cca08g00691 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Cca08g00691 321 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Cca08g00691 321 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Cca08g00691 321 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Cca08g00691 321 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Cca08g00691 321 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00691 Cca-Chr8 12842438 12849252 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00691 33 183 Acyl Lipid Metabolism Gene Families AT1G62610 30.818 1.85e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00691 - K19329 gmx:100776100 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00691 08 12842438 12849252 Cca08g00691 08 12842438 12849252 ECH