Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00688 ATGTGGCCATTCAGTAGAAAAGGGGCTTCTGGCTTTTCATCATGCTCCACTGCTGAGGAAGTTACTTATGGAATCGATGGTAGTGGCCTCACTGCTATTGTTACAGGGGCATCTGGTGGTATTGGTGCTGAGACAACTCGTGTTCTTGCTATGCGTGGTGTCCATGTGATTATGGGGGTGAGAAACATGAATGCTGCAAAAGATGTTAAAGAAGCAATACTTAAGGAGATTCCCACGGCTAAAGTTGATATCATGGAATTAGACCTTAGTTCAATGGCATCAGTTCGGAAATTTGCATCAGAGTTCATTTCATCTGGTCTTTCACTAAACATTCTGATAAACAATGCAGGAATTTTTGCAACCCCTTTCACGCTGACTGAGGACAACATTGAACTACAATTTGCCACAAATTACATGGGTCATTTTCTGTTAACAAATCTGTTGTTGGATACTATGAAGAAAACAACTCATGAAAGTAAGAAACAAGGAAGAATTATTAATATTTCCTCCATGCTTCATCAATGGACATATGGTGGAGGAATCCTTTTTGATAAAATTAATGATCCATCAAGTTATCATAATTGGCTTGCATATGGACAATCAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCAAAACGTTTCAAGGAAGAAGAGGTAGATATTACTGCTAATTCTCTTCATCCGGGAGCTATTCTCACCAATATTTTTCGTCACAGTGCGCTGGCTGGTGTAATTAATACGTTCGGGAAATTCGTGTTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAGGGAAATCAGTGGCAAGTATTTTGTAGATTGTAATATTGGCAGAGCAAACTCACAGGGAAGGGACATTGAGTTGGCCAAGAAACTTTGGGATTTTAGCATCAATTTGATTAAGTAG 939 0.3951 MWPFSRKGASGFSSCSTAEEVTYGIDGSGLTAIVTGASGGIGAETTRVLAMRGVHVIMGVRNMNAAKDVKEAILKEIPTAKVDIMELDLSSMASVRKFASEFISSGLSLNILINNAGIFATPFTLTEDNIELQFATNYMGHFLLTNLLLDTMKKTTHESKKQGRIINISSMLHQWTYGGGILFDKINDPSSYHNWLAYGQSKLANILHANELAKRFKEEEVDITANSLHPGAILTNIFRHSALAGVINTFGKFVFKNVQQGAATTCYVALHPQVREISGKYFVDCNIGRANSQGRDIELAKKLWDFSINLIK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00688 312 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Cca08g00688 312 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 287 IPR036291 -
Cca08g00688 312 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Cca08g00688 312 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Cca08g00688 312 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Cca08g00688 312 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Cca08g00688 312 Gene3D - 26 312 - -
Cca08g00688 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Cca08g00688 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Cca08g00688 312 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Cca08g00688 312 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Cca08g00688 312 CDD retinol-DH_like_SDR_c_like 29 304 - -
Cca08g00688 312 Pfam short chain dehydrogenase 31 174 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00688 Cca-Chr8 12765531 12772506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00688 33 183 Acyl Lipid Metabolism Gene Families AT1G63380 29.630 1.53e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00688 - - gmx:100794358 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00688 08 12765531 12772506 Cca08g00688 08 12765531 12772506 ECH