Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00685 ATGTCTGATGCTGCTATGGAAGTTATGAAACCTGAGATGAAATCCTACATCTGGCTTCAAACTGCGGATGGTTCTATTCAGCAAGTAGAGGAAGAGGCAGCCATGTTTTGCCCCATGATTTGCCAGGAAGTACTTCAAACAGGCATGGGATCTTCCAAAGCTTATGCTATATCTCTTCCACAACGTGTCAATCCTGCAATCTTGGGTTTGATACTTGATTACTGTCGGTTTCACCAAGTACAAGGACGATCTAATAAGGAGCGCAAAACTTTTGATGAGAAGTTTATTCGGATGGATACAAAGAAGTTATGTGAGTTGACATCTGCTGCTGACAGCCTCCAACTAAAGCCTTTGGTTGACCTGACCAGCCGAGCACTCGCTCGGATTATTGAAGGAAAAACTCCTGAAGAGATTCGTGAAACATTTCATTTGCCTGATGACCTCACTGAGGAGGAGAAGCTGGAGCCTCTAAGAAACATAACTGATGATCCACGTATTCGACTTCTAAACAGATTATATGCTAGAAAGAGGAAAGAACTAAAAGAGAGGAAGAAACTGAAGGATGTTGAGGTTGAGGAAGAGCCAAAGGATGAGCGCTCAGTTGAAGATCTCCTATCATTTATTAATGGTGCAGATGGAGATACAAAGGAAACTAGAGCAAATAAAAATAAAAAGAAGAATAGGAGAAGGAAAGATCATGCAAAGGATCTTTCACAAAATGCAAATGAAAACGATAAGGAGTTGAATCCTCTTACTTCTGCATATCATAATGGGAACTTTGACAATGCCTCTGCAAGTCAACATTCGATGATGCAAAACCTTCCTGCTGTTAATTTTTCTCCAAAATTTGAATTTATTGATGGTGATATGGATGATGATTTAGATCCTGCAATGAAGGAGGAGCTTGACAGGGAAGTGGAGGATTTTGCACGAAGATTGAATTCAGATTGGCCTGAAAGGATGCAAATTTTATCTTTGGGCCAAGACAGAAGACTAGTACCAATTTCTATGAATAGCAGTGGTTCAACGCACATGTATACAAGTTTTGATCAAAGATAG 1059 0.4013 MSDAAMEVMKPEMKSYIWLQTADGSIQQVEEEAAMFCPMICQEVLQTGMGSSKAYAISLPQRVNPAILGLILDYCRFHQVQGRSNKERKTFDEKFIRMDTKKLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYARKRKELKERKKLKDVEVEEEPKDERSVEDLLSFINGADGDTKETRANKNKKKNRRRKDHAKDLSQNANENDKELNPLTSAYHNGNFDNASASQHSMMQNLPAVNFSPKFEFIDGDMDDDLDPAMKEELDREVEDFARRLNSDWPERMQILSLGQDRRLVPISMNSSGSTHMYTSFDQR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00685 352 PANTHER OS03G0107000 PROTEIN 1 262 - -
Cca08g00685 352 Pfam Skp1 family, tetramerisation domain 17 79 IPR016073 GO:0006511
Cca08g00685 352 Gene3D Potassium Channel Kv1.1; Chain A 10 160 IPR011333 -
Cca08g00685 352 Pfam Skp1 family, dimerisation domain 116 153 IPR016072 GO:0006511
Cca08g00685 352 MobiDBLite consensus disorder prediction 186 255 - -
Cca08g00685 352 PANTHER SKP1 1 262 IPR016897 GO:0006511
Cca08g00685 352 SMART skp1_3 14 115 IPR001232 GO:0006511
Cca08g00685 352 SUPERFAMILY POZ domain 15 79 IPR011333 -
Cca08g00685 352 MobiDBLite consensus disorder prediction 186 203 - -
Cca08g00685 352 SUPERFAMILY Skp1 dimerisation domain-like 90 157 IPR036296 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00685 Cca-Chr8 12690233 12694808 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00685 - - gmx:100775387 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00685 08 12690233 12694808 Cca08g00685 08 12690233 12694808 ECH