Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00675 ATGGCTTCTATCTCCCTGCTTCTCACCCTGTTCGTGTTCTCCGTAATTGGCACTTCGTCGTCGGAAAGCAGTAGGAAGGAATTAAGGAACAAGCAGGAAACTGCATTACAGACGTTAGAGCACTCATTTCACTATTCCAACAGAATTAACCCTTCCCGTGTTGTCCAAATCTCTTGGCAACCAAGGGTTTTTCTATACAGAGGTTTTTTGTCGGACAAGGAGTGTGACTATCTCGTTTCTTTGGCATATGCTTTGAAAGAAGAATCCACAGAGAATGGTGGTCTTTCAGAGGGGGTTGGAGCTTCCTTGGATATGGATGATGGTATTCTTGCAAGGATTGAAGAAAGACTTTCAGCTTGGACTTTCCTTCCAAAAGAGAACAGCAAACCTTTGCAGGTCGTGCATTATGGGCCTGAGCAGAATGGTCGGAACTTAGATTATTTTACGAACAAAACCAAATTGGAATTAAGTGGACCTTTAATGGCAACAGTTGTTTTGTATCTCTCAAATGCTACTCAAGGGGGTCAAATTCTCTTCCCTGAATCAGTGCCCAGGAGTAGCAGCTGGTCAAATTGTAGTAATAGTAGTAAGATTCTCCAACCAGTAAAAGGGAATGCTGTTCTATTTTTCTCTCTTCACCCAAGTGCTTCTCCTGACCAGAGTAGCTTCCATGCTAGATGCCCTGTTCTTGAGGGGGATATGTGGTCTGCGACTAAATACTTCTATGCAAGACCAATTAACAAAGGCAATGTCTCAGTCATATCAGATGGTGGTGACTGCACTGATGAGGATGACAATTGTCATGCTTGGGCAGCCATTGGAGAATGTCAAAGAAACCCTGTGTTCATGATTGGATCTCCTGATTATTATGGTACGTGTAGGAAAAGTTGTAATGCATGCTGA 903 0.4308 MASISLLLTLFVFSVIGTSSSESSRKELRNKQETALQTLEHSFHYSNRINPSRVVQISWQPRVFLYRGFLSDKECDYLVSLAYALKEESTENGGLSEGVGASLDMDDGILARIEERLSAWTFLPKENSKPLQVVHYGPEQNGRNLDYFTNKTKLELSGPLMATVVLYLSNATQGGQILFPESVPRSSSWSNCSNSSKILQPVKGNAVLFFSLHPSASPDQSSFHARCPVLEGDMWSATKYFYARPINKGNVSVISDGGDCTDEDDNCHAWAAIGECQRNPVFMIGSPDYYGTCRKSCNAC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00675 300 ProSiteProfiles ShKT domain profile. 260 300 IPR003582 -
Cca08g00675 300 PANTHER PROLYL 4-HYDROXYLASE ALPHA SUBUNIT 1 300 IPR045054 -
Cca08g00675 300 PANTHER PROLYL 4-HYDROXYLASE 12-RELATED 1 300 - -
Cca08g00675 300 SMART p4hc 61 242 IPR006620 GO:0005506|GO:0016705|GO:0031418
Cca08g00675 300 Pfam 2OG-Fe(II) oxygenase superfamily 132 242 IPR044862 -
Cca08g00675 300 SMART ShkT_1 259 300 IPR003582 -
Cca08g00675 300 Gene3D q2cbj1_9rhob like domain 53 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00675 Cca-Chr8 12557278 12561601 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00675 K00472 - gmx:100795761 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00675 08 12557278 12561601 Cca08g00675 08 12557278 12561601 ECH