Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00673 ATGGGAACATCAGTGCAGGTAACGCCTCTGTGTGGAGTGTACAATGAGAATCCTCTCTCTTATTTGGTCTCCATTGATACCTTCAACTTCCTTGTTGACTGTGGCTGGAACGACCACTTCGACCCTTCCCTCCTTCAACCCCTCTCTAGGGTAGCATCAACCATAGATGCAGTCTTGCTTTCACATCCGGATACACTTCACCTTGGTGCACTCCCTTATGCCATGAAGCAGCTTGGACTATCGGCCCCTGTTTATTCAACTGAACCTGTCTACAGATTGGGCCTTCTCACTATGTATGACCAATACCTCTCAAGAAAGCAAGTATCAGAATTTGATCTGTTCACGCTGGACGATATTGATTCTGCTTTCCAGAGTGTAACGAGGCTAACGTACTCTCAGAATCATCATCTCTCAGGCAAGGGAGAAGGAATTGTGATTGCACCTCATGTTGCTGGCCATCTTTTGGGAGGCACTGTTTGGAAAATTACAAAGGATGGTGAGGATGTCATATATGCTGTTGATTTTAATCATCGGAAGGAAAGGCATTTGAATGGAACTGTTCTAGGTTCTATGGTGCGGCCAGCTGTTCTAATAACTGATGCTTACAATGCTTTGAACAATCAGCCTTACAGACGTCAAATGGACAAAGAATTTGGAGATAGCTTAAAGAAGACTCTAAGGTCAGGTGGCAATGTATTACTACCTGTTGACACTGCTGGACGAGTGTTGGAACTTATTCTGATGTTGGAATCGTATTGGTCTGATGAAAACTTGAACTACCCGATATACTTTCTTACATATGTTGCATCCAGCACAATTGATTATGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCGAAGTCTTTTGAAAAAACTCGTGAAAATATATTTCTTTTGAAGAATGTCACCCTTCTGATTAACAAGACTGAACTAGACAATGCTCCAGAGGGTCCAAAGGTTGTTCTAGCATCCATGGCAAGTTTGGAAGCAGGTTTTTCTCATGATATATTTGTTGAGTGGGCCAATGATGTAAAAAATCTTGTGCTTTTTACCGAAAGGGGCCAGTTTGCCACACTAGCTCGTATGCTTCAAGCTGATCCACCACCAAAAGCTGTCAAAGTCGTTGTGTCCAAGCGGGTTCCTTTGGTTGGGGATGAACTAATTGCCTATGAAGAGGAGCAAAATCGAATTAAAAAAGAAGCTTTAAAAGCCAGTCTTATGAAAGAGGAAGAGTTGAAAACATCTCATGGGGCTGATAATAATACTAGTGATCCAATGGTCATTGATTCCGGCAATAATCATGTATCAGCTGAAGTGGCTGGTACACGAGGTGGAGGATACCGGGACATATTTATTGATGGATTTGTTCCCCCTTCGACAAGTGTTGCTCCAATGTTTCCCTGTTATGAGAATACATCAGAGTGGGATGATTTTGGTGAAGTCATAAATCCAGATGATTATGTAATTAAGGATGAAGACATGGACCAGACAGCAATGCATGTAGGAGGTGATATAAATGGAAAACTAGATGAAAGTGCTGCGAGTTTGATACTTGATACAAAGCCATCAAAAGTCGTATCTGATGAGAGGACTGTGCAAGTCAGGTGTTCGTTGGTGTACATGGATTTTGAAGGACGTTCAGATGGAAGATCCATTAAAAATATTCTATCTCATGTGGCTCCCTTGAAGCTGGTTTTGGTGCATGGGTCAGCTGAGGCTACAGAGCATCTGAAGCAGCACTGCCTAAAGCATGTTTGTCCTCACGTTTATGCTCCCCAAATTGAAGAGACAATTGATGTTACCTCTGATTTATGTGCTTATAAGGTGCAACTATCTGAGAAGCTAATGAGTAATGTACTCTTCAAAAAGCTGGGAGATTATGAAATAGCTTGGGTTGATGCTGTAGTAGGGAAGACAGAAAATGACACTCTTTCGCTGCTCCTCTCCACTGCTCCCTGTCACCGGAGCAGCTCCTCCCCATAA 1989 0.4258 MGTSVQVTPLCGVYNENPLSYLVSIDTFNFLVDCGWNDHFDPSLLQPLSRVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDIDSAFQSVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERHLNGTVLGSMVRPAVLITDAYNALNNQPYRRQMDKEFGDSLKKTLRSGGNVLLPVDTAGRVLELILMLESYWSDENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEKTRENIFLLKNVTLLINKTELDNAPEGPKVVLASMASLEAGFSHDIFVEWANDVKNLVLFTERGQFATLARMLQADPPPKAVKVVVSKRVPLVGDELIAYEEEQNRIKKEALKASLMKEEELKTSHGADNNTSDPMVIDSGNNHVSAEVAGTRGGGYRDIFIDGFVPPSTSVAPMFPCYENTSEWDDFGEVINPDDYVIKDEDMDQTAMHVGGDINGKLDESAASLILDTKPSKVVSDERTVQVRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAVVGKTENDTLSLLLSTAPCHRSSSSP 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00673 662 Pfam Beta-Casp domain 242 365 IPR022712 -
Cca08g00673 662 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 533 584 IPR011108 -
Cca08g00673 662 Gene3D - 7 259 IPR036866 -
Cca08g00673 662 Pfam Metallo-beta-lactamase superfamily domain 22 194 IPR001279 -
Cca08g00673 662 Coils Coil 392 412 - -
Cca08g00673 662 SMART Beta_Casp_2 242 365 IPR022712 -
Cca08g00673 662 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Cca08g00673 662 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 644 IPR027075 GO:0005847|GO:0006378|GO:0006379
Cca08g00673 662 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 602 IPR036866 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00673 K14402 - gmx:100777002 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00673 08 12505290 12515641 Cca08g00673 08 12505290 12515641 ECH