Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00647 ATGTCTAATATGATAGAGGTGAGAGTTCCAAATCTTGATTGTGAAGGATGTGCTTCAAAATTAAAGAAAGCTCTCTTCAAGCTCAAAGGAGTAGATGAGGTAGAAGTTGAAATGGAAGCACAAAAAATAACAGTGAGAGGTTATGGATTGGAGGAAAAGAAAGTTCTTAAGGCAATCAAACGTGCAGGGAAAGTAGCAGAGCCATGGCCATTTCCAGGGCATGCACATTATGCTTCATTCTACAAGTACCCTAGTTACATTGTTAACCATTACTATGATGCATACAAAAGTGAAGCAACAAGTGGGGTCCACACTTTCTTCCACACCCCTGCAGTGTATTCAGTTGCTGTGGCATCTGATGAGGCCTTTGCTTCTCTCTTTAGTGATGATAACCCTCATGCTTGCTCTATAATGTAA 417 0.4053 MSNMIEVRVPNLDCEGCASKLKKALFKLKGVDEVEVEMEAQKITVRGYGLEEKKVLKAIKRAGKVAEPWPFPGHAHYASFYKYPSYIVNHYYDAYKSEATSGVHTFFHTPAVYSVAVASDEAFASLFSDDNPHACSIM 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00647 138 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 3 138 IPR045181 GO:0046872
Cca08g00647 138 Pfam Heavy-metal-associated domain 7 64 IPR006121 GO:0046872
Cca08g00647 138 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 31 3 138 - -
Cca08g00647 138 CDD HMA 6 67 IPR006121 GO:0046872
Cca08g00647 138 ProSiteProfiles Heavy-metal-associated domain profile. 4 68 IPR006121 GO:0046872
Cca08g00647 138 Gene3D - 2 66 - -
Cca08g00647 138 SUPERFAMILY HMA, heavy metal-associated domain 4 69 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00647 Cca-Chr8 11784860 11787259 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00647 - - gmx:100802676 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00647 08 11784860 11787259 Cca08g00647 08 11784860 11787259 ECH