Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00618 ATGTCTAGACTCATGGAACCACTTGCTGTGGGAAGAGTGATAGGGGAAGTGGTTGACATTTTCACCCCAAGTGTGAGAATGAATGTGACATATTCCACCAAGCAAGTTGCTAATGGCCATGAGTTAATGCCTTCTACTATCGTGGCCAAGCCACGCGTAGAGATTGGTGGTGATGACATGAGGACTGCTTATACCTTGATCATGACAGACCCAGATGCTCCCAGTCCTAGTGATCCATATCTAAGGGAACATCTTCACTGGATGGTTACAGATATCCCTGGCACCACAGATGTCTCTTTTGGAAAAGAGATTGTGGGCTATGAGAGTCCAAAGCCAGTGATAGGAATCCACAGATATGTATTCATCCTGTTCAAGCAGAGAGGAAGACAAACAGTGAGACCTCCATCTTCAAGAGACTATTTCAACACGAGGAGGTTCTCAGAGGAGAATGGCCTTGGCCTACCAGTTGCTGCTGTTTACTTCAATGCTCAAAGAGAGACTGCTGCAAGGAGGAGGTGA 519 0.4644 MSRLMEPLAVGRVIGEVVDIFTPSVRMNVTYSTKQVANGHELMPSTIVAKPRVEIGGDDMRTAYTLIMTDPDAPSPSDPYLREHLHWMVTDIPGTTDVSFGKEIVGYESPKPVIGIHRYVFILFKQRGRQTVRPPSSRDYFNTRRFSEENGLGLPVAAVYFNAQRETAARRR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00618 172 Pfam Phosphatidylethanolamine-binding protein 51 161 IPR008914 -
Cca08g00618 172 Gene3D - 1 172 IPR036610 -
Cca08g00618 172 PANTHER CEN-LIKE PROTEIN 1 5 171 - -
Cca08g00618 172 SUPERFAMILY PEBP-like 12 166 IPR036610 -
Cca08g00618 172 CDD PEBP_euk 25 163 IPR035810 -
Cca08g00618 172 ProSitePatterns Phosphatidylethanolamine-binding protein family signature. 64 86 IPR001858 -
Cca08g00618 172 PANTHER PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 5 171 IPR035810 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00618 Cca-Chr8 10952839 10954523 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00618 K06910 - gmx:100174966 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00618 08 10952839 10954523 Cca08g00618 08 10952839 10954523 ECH