Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00615 ATGCGAGCCTTCGCTTCTCGAACCTCCACCTTCTTCTTCAACCGCAACCTCCTACCGATCAACCCCTACCGACCAATGTCCCAATCCACCGCAATCCCCAAGAAGCAGCTCAGAGTTCGCGACCACGGCTACGACAACTACATGGAAGTCGAGAAGAAAACCCGCAAGGTCCTCAAAATCCAGGCCCTCATCCTCTCTCAGCCCACCCAATCGCTCCCTATCTCGCGCCTCGAGACCCTCGCCCGCCGCGCCGGCCTCACGCGCCACGACGCCGGCGCGTTCATCCTCAAGTTCCCCCACGTGTTCGAAATCTTCGAGCACCCCGTGCAGCGCATCCTCTTCTGCCGCCTCACCCGCAAGGCCATCCTCCAGATCCAGCAAGAGCGCCACGCGCTCTTAGAACAGATTCCACGCGCCGTCACGCGCCTCCGGAAGCTCCTCATGATGTCCAACGAAGGCCGCCTCCGCCTCGAGCACGTGCGAATCGCACGCGCCGCGCTTGGCCTCCCCGACGACTTCGAATTCTCGGTGGTTCTGAGTTATCCCCAATATTTTCGCTTGGTTGATGCTGAGTTGACTAGGAATAAGTACATTGAGATTGTGGAGAGAGACCCTAGGTTGAGAACATGCGCAATTGAGGAGGTTAGGGAGAGGGTTTATAGACTTAGAGGTGGTGATGCTGAGGATGTTAGGTTTTCTTTTGTGGTTGATTTTCCACCTGGTTTTAAGATTAAAAAGTATTTTAGGATTGCAATGTGGAAGTGGCAGAGGCTTCCCTATTGGTCCCCTTATGAGGATGTTTCTGGGTATGATTTGAGGTCCATTGAGGCCCAGAAGAGGATGGAGAAGCGGGCTGTTGCCACCATTCATGAGTTGTTGTCGTTGACCGTGGAGAAGAAGATCACGCTGGAGCGGATTGCGCATTTCCGGATGGCGATGAACCTGCCCAAGAGGTTGAAGGATTTTCTGCTGCAGCATCAGGGGATTTTCTATGTCTCCACCAGGGGGAATCAGGGGAAGCTCCACACGGTTTTCCTCAGGGAGGCGTATCGGAAGGGCGAGCTGGTTGAGCCGAATGAGTTGTATTTGGCACGGAGGAAGCTGGCTGAGCTTGTCCTGTTGAGCCCCCGGAAAGCTAAGGTTGATAGGGAGTTGGTTGGGTACCGGAGAAGCAGGTTTGAGGATGAAATGGGGCAGGTGACAAGGGCATATGTCGAGGATGCTTGTGAGGACTTTAAGGGTGAAGATGGTGTAGGGCAAgatggggatgaagaggatgatttgacTTTTGCAATCGAGAAGGTTCTTGATATAGTTTCAAATTCTGAAATTTCAAAGCAGGTTCAAGGGATGATTAGTTAA 1362 0.5235 MRAFASRTSTFFFNRNLLPINPYRPMSQSTAIPKKQLRVRDHGYDNYMEVEKKTRKVLKIQALILSQPTQSLPISRLETLARRAGLTRHDAGAFILKFPHVFEIFEHPVQRILFCRLTRKAILQIQQERHALLEQIPRAVTRLRKLLMMSNEGRLRLEHVRIARAALGLPDDFEFSVVLSYPQYFRLVDAELTRNKYIEIVERDPRLRTCAIEEVRERVYRLRGGDAEDVRFSFVVDFPPGFKIKKYFRIAMWKWQRLPYWSPYEDVSGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPKRLKDFLLQHQGIFYVSTRGNQGKLHTVFLREAYRKGELVEPNELYLARRKLAELVLLSPRKAKVDRELVGYRRSRFEDEMGQVTRAYVEDACEDFKGEDGVGQDGDEEDDLTFAIEKVLDIVSNSEISKQVQGMIS 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00615 453 PANTHER PROTEIN ROOT PRIMORDIUM DEFECTIVE 1 21 428 IPR040295 -
Cca08g00615 453 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 21 428 IPR045040 GO:0003723
Cca08g00615 453 Pfam Plant organelle RNA recognition domain 39 375 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00615 Cca-Chr8 10922171 10924395 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00615 - - gmx:100782167 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00615 08 10922171 10924395 Cca08g00615 08 10922171 10924395 ECH