Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00599 ATGATGAGGATGAGGAATAGTAGTGGTAGCAGTAATAATCACAATAACAAGACAAATGGTCTTTCCTCCATCATGAATGGAGGCTCAACTGGTTGCAGAGGTGAGCCTGGCTCCAAGGAGTGGGAGATGAGGCCAGGTGGAATGCTGGTTCAGATGAGAACCGCTGACTCGGATCGGAACTCAGTGCTTGTTCCCACTATTAGAGTTAGGGTCAAGTATGGTTCAATTTACCATGAAGTCAACATTAGTTCCCAAGCTACATTTGGGGAGTTGAAGAAAATGCTGTCAGGGCTAACTGGGCTACACCATCAAGACCAAAAGCTGTTTTACAAAGACAAGGAGAGGGATTCAAAGGCTTTTCTTGACATAGTTGGGGTCAAGGACAAATCCAAGATAGTGCTAGTGGAAGACCCTATTAGTCAAGAGAAGAGGTTGTTGGAGATAAGGAAGAATGCTAAGATGGAGAAAGCTGCAAAGTCGATCTCAGAAATCAGCTTGGAAGTAGATAGGCTTGCAGGGCGGGTATCAGCCTTTGAGACAATTATTAGCAAAGGTGGGAAAGTTGCGGAAACAGATGTGCTTAGTCTGATTGAGCTATTGATGAATCAATTGCTGAAATTGGATGGCATAATGGCTGATGGGGACGTGAAATTGCAGAGGAAAATGCAGGTGAAAAGGGTTCAAAAGTATGTTGAAACTTTGGATTTGCTGAAAGTTAAGAATTCCATGCCTAGTAGCAATGGAGGGCATGCCCCAGTGCAGCCTCAACAGAAGCATTCAAATGGGCAACAACAAAAGCATTCAAATGGACATAATCATAGGTTAGCACCAATTCAGGAGCAGCAACAAGAGCAAGCAAGGAACTCAAATGGGAATTCTCTAGCACTTTACCAAGACCAACAACAACAGCAACCCTCAAGGAATTCCACTTCAGGAGTTGTCGTAACCACAAATTGGGAATTGTTTGATTCTGTCCCACCATTGATCCCTGTGCcatccacatccacatccacatccccacccccacacccctcAGTGACCAATAATAATTCAGGTCCTCCCAAGTTCAATTGGGAATTCTTCGACTAA 1089 0.4206 MMRMRNSSGSSNNHNNKTNGLSSIMNGGSTGCRGEPGSKEWEMRPGGMLVQMRTADSDRNSVLVPTIRVRVKYGSIYHEVNISSQATFGELKKMLSGLTGLHHQDQKLFYKDKERDSKAFLDIVGVKDKSKIVLVEDPISQEKRLLEIRKNAKMEKAAKSISEISLEVDRLAGRVSAFETIISKGGKVAETDVLSLIELLMNQLLKLDGIMADGDVKLQRKMQVKRVQKYVETLDLLKVKNSMPSSNGGHAPVQPQQKHSNGQQQKHSNGHNHRLAPIQEQQQEQARNSNGNSLALYQDQQQQQPSRNSTSGVVVTTNWELFDSVPPLIPVPSTSTSTSPPPHPSVTNNNSGPPKFNWEFFD 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00599 362 SUPERFAMILY Ubiquitin-like 56 141 IPR029071 -
Cca08g00599 362 SMART BAG_1 160 238 IPR003103 GO:0051087
Cca08g00599 362 Pfam BAG domain 161 236 IPR003103 GO:0051087
Cca08g00599 362 CDD Ubl_AtBAG1_like 66 135 - -
Cca08g00599 362 PANTHER BCL2-ASSOCIATED ATHANOGENE 1 339 IPR039773 GO:0051087
Cca08g00599 362 SUPERFAMILY BAG domain 120 242 IPR036533 GO:0051087
Cca08g00599 362 MobiDBLite consensus disorder prediction 1 43 - -
Cca08g00599 362 Pfam Ubiquitin family 77 135 IPR000626 GO:0005515
Cca08g00599 362 Gene3D BAG domain 137 242 IPR036533 GO:0051087
Cca08g00599 362 MobiDBLite consensus disorder prediction 340 355 - -
Cca08g00599 362 ProSiteProfiles Ubiquitin domain profile. 65 135 IPR000626 GO:0005515
Cca08g00599 362 MobiDBLite consensus disorder prediction 241 271 - -
Cca08g00599 362 PANTHER BAG FAMILY MOLECULAR CHAPERONE REGULATOR 3 1 339 - -
Cca08g00599 362 ProSiteProfiles BAG domain profile. 160 238 IPR003103 GO:0051087
Cca08g00599 362 MobiDBLite consensus disorder prediction 327 362 - -
Cca08g00599 362 Gene3D - 66 136 - -
Cca08g00599 362 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Cca08g00599 362 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00599 Cca-Chr8 10473547 10476730 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00599 - - gmx:100819022 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00599 08 10473547 10476730 Cca08g00599 08 10473547 10476730 ECH