Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00594 ATGGGTCCCTTTCGCTTCCTCTTGCTCTTCGCCGCCCTCTGCTCCCTCCTCCGCCCCCTCGCCGCCACCGACGGCGACGCCGATCCACTTTACGTAGGTTGTGTGCAGCAGTGTGAGAAAACTGGATGTGTAGGGGATAGATGCTTTCAGCATTGTAAATTCTCATCAGATGGGAAGCCAATTGATGGTCCATGGTACATGCATGAACCCCTCTACTTGAGGTGGAAACAATGGGACTGTCGCACTGACTGTAGGTATTACTGTATGGTAGCTAGAGAGGAAGAAAGAACAAAACTTGGTGATAAGCCTGTCAAGTATCATGGAAAATGGCCATTTCGACGTGTTTATGGGATTCAGGAACCGGTGGCTGTTGCTCTGTCTGCCCTCAATCTTGCTATGCAGTTTCATGGTTGGGTATCTTTTTTCATTCTTGTGTACTATAAGTTGCCTTTGAGGCCAGACAAGAAGACTTACTATGAGTACACTGGATTGTGGCATATCTATGGGATTCTATCTATGAATGCATGGTTGTGGAGTGCTGTTTTTCACAGCAGAGCCGTGGAATTAACAGAGAAGCTGGATTTTTCTTCTGCTGTGGCCTTACTTGGATTCACCCTCATTCTAGCAATACTGCGAGCTTTTAACGTGAGGGATGAGGCTACACGAGTCATGATTTCTGCTCCCTTGATTGCATTTGTGACAACTCATATCATGTATCTGAATTTCTACGAACTTGCTTATGGTATGAACAGGATAGTTTGCATGGGAATGGTTATTGTCCAGCTTCTTATTTGGGCCATTTGGGCCGGTGCTTCAAACCATCCAGCGCGATGGAAGTTATGGGCAGTAGTGGTTGGAGGAGGCTTAGCTATGGTGTTGGAGACATATGACTTCCCACCTTACATGGGATATGTGGATGCTCATGCTCTATGGCATGCAACAAGAATTCCTATCACATTTTTTTGGTGGAGTTTTATAAGGGATGATGCAGAGTTTAGAACCTCAGCTCTGCTTAAGAAGTCTCACTTGAGCATAGGAACACTTCATCTTTCACCAACAATGGAAGAAGACCCTGACAAGAAAAAGAAGAGGGAAGATAAGGCAAGAGAGAAGCAATTGAAAAAAGAAAAGTTTCTTCTTAAGCAAGCTCAGGAACAGGATCGGCACCCGTCTCGTGCCTCAAAAAGGAATGGAAGAAAAAATGTGAAAGGTGGAGTAGAGGATGAGAATCCTGAAGATTGTGTTGATCCTGAGACTCCTTCAGGTGATAAGAAACGTATGTCCTGTCAAATGTCAAAGCAGTACAGTCCAAGTGCTGTGGAGAAATCGTGGTATGAGTGGTGGGAGAAATCAGGGTTCTTTGTGGCAGATGCTAGCAGCACCAAACAACCTTTTGTTATTGTTTATCCTCCTCCTAATGTGACTGGTGCTCTCCACATAGGTCATGCTCTCACAGCAGCAATACAGGACACAATGATTCGTTGGCGAAGAATGTCTGGATACAATGCTTTGTGGGTGCCTGGGATGGACCATGGTGGGATTGCAACACAGGTTGTAGTTGTGGAGAAAAAGATAATGCGTGAAAAACAATTAACCAGGCATGATCTTGGCCGTGAGAGATTTATATCTGAGGTTTGGAAATGGAAACACAAGTATGGGGGCACAATATTACAACAACTACGTCGGTTAGGAACCTCTATGGATTGGTCTCGTGAGTGTTTCACAATGGATGACAGAAGATCTAACGCTGTGACAGAAGCTTTTGTGAGGCTATACAAGCATGGCCTTATCTACAGGGATGTTCGTTTAGTGAATTGGGATTGTGTGTTACGAACAGCAATATCCGATATTGAGGTATGCAATGTGAGTGCTTCAATGTTTTACTTGATGTATTCCATATTTAGTGTAATTACTTGCTGCATGAAGGTGGATTATGTTGAAATCAAAGAAAGGACTCTGCTTAATGTTCCGGGATATGCGAAACCGGTGGAATTTGGGGTGTTAACAAAATTTGCCTACCCTTTGGAAGGGAACCTTGGTGAAATTGTTGTGGCCACAACTAGAATAGAAACTATGCTTGGTGACACTGCTATTGCTATACATCCTAGTGATGACAGATTCTGCCAATTTCATGGGAAATATGCTATTCATCCATTTAATGGCAGAAAGCTTCCTATAATTTGTGATACTATTCTTGTTGATCCAAAGTTTGGGACTGGTGCTGTTAAGATTACCCCTGCTCATGACCCCGAAGATTTTGATGTGGGGAAGCGTCACAACCTTGACTTCATCAATATTTTCACTGATGATGGTAAAATAAATAGCAATGGTGGCTTCAAATTTGAGGGCATGCCACGATTTAAAGCTAGAGAAGCAATCATAGAAGTATTGCAGCAGAAGGGCTTGTACAGAGGTTCTGAAAGCAATGAGATGCGACTTGGTGTATGTTCGAGAAGCAATGATATAGTGGAACCCCTAATAAAGCCGCAGTGGTATGTTATGTCTGAGGATCTGGGAAAGCAGGCTCTTCATGCTTTAGAACGCAAAAAACTAGATATTATACCAAAGCAATTTACAGCTGACTGGAAGAGATGGCTAGGAAATATACATGATTGGTGCATTTCGCGGCAGCTATGGTGGGGTCACCAAATACCTGCATGGTATGTCATGTTAGAGGATGACACTCTTCAGGAATATGGTGCTTATGAAGATCATTGGATAGTGGCAAGAAATGAAAAGGAGGCTCAAGAGGAGGCTAGCCTAAGGTATAATGGAAAGAAGTTTCACTTGAGGCAGGATCCTGATGTACTTGATACATGGTTTTCTGCTGGTCTGTATCCATTATCTGTATTGGGCTGGCCAGATGTGACAGAAGATCTTAGGGCATTTTATCCAACTTCTGTGTTGGAAACTGGCCATGATATCATCTTCTTTTGGGTTGCTCGGATGGTGATGTTAGGAATGAATCTGGGTGGAGATGTGCCTTTTAGAAAGATATATTTGCATCCCATGATTCGGGATGCACATGGCCGAAAGATATCTAAGTCCTTAGGAAACGTTATTGATCCCATTGAAGTGATAAATGGGATATCACTGGAAGGTCTGCATAAGAGGCTAGAGGATAGTAACCTGGACCCCAAAGAACTAACTGTAGCTAGAGCAGGTCAGAAGAAGGACTTTCCAGATGGAATTGATGAATGTGGTGCTGATGCTCTCCGTTTTGCACTGGTCTCATACATGGCTCAGTCTGACAAAATTAACTTAGACATTAAAAGGGTAGTAGGGTACCGGCAATGGTGTAATAAATTGTGGAATGCAGTGCGGTTTGCTATGACCAAGCTTGGAGATGATTATACTCCACCTGCAAAATTGAATCCAGATGTTCTTCCATTTAGCTGCCAGTGGATACTTTCAGTGTTGAATAAAACCATATCCAAAACTATAAAGGCTCTGGAGTCATTTGAGTTCTCCAATGCTACCAGTGCTGTGTATTCTTGGTGGCAGTATCAATTGTGTGATGTATTTATTGAAGTGGTTAAACCTTATTTTACTGGTAATGATCCCAAGTTTGCTTCTGAAAGAATATTTGCAAAAGACACTTTGTGGTTTTGTCTTGACAACGGCCTGAGGTTGCTTCATCCCTTTATGCCATTTGTCACGGAGGAATTGTGGCAGCGCCTTCCTTCACCGATGGAATGCAAGAGGGAGGAATCTATCATGATAAGCAGTTATCCATCACCTGTCGAGTGCTGGAATAATGAAAGGGTGGAGGATGAGATGGCTCTTTTAGAGAGTGCTGTTAAGTCTCTCAGATCACTATCAAATGAAAGACATGAGAGGCGACCAGCTTTTGCTCTTTGCCAAACACAGATGGTGACAAAGATTATCAACAACTATAAACTAGAGATTGTTACTCTATCAAATCTATCCTCTTTGACTGTAATCAATGAAAATGATCCTGTTCCATCTGGATATGCCATGTCACTTGTAAATGAAAGCCTTTCTGTTTATGTGGAGCCTCAAGGAAATATTTTTTCAGAAGCAGGGCAAGAACAGATTCAGAAGCACATACAAGAGTTAAGGAAGCAAATAGAAAGACTAGAGAAGACTATAAACGCTCCAGCGTATGAAGATAAGGTTCCATCGCATATTCAAGATGGAAACAGAAAGAAGCTAGAGTCACTGCTAAAGAAGTTAGATACCTTCAAAATGTAA 4215 0.4256 MGPFRFLLLFAALCSLLRPLAATDGDADPLYVGCVQQCEKTGCVGDRCFQHCKFSSDGKPIDGPWYMHEPLYLRWKQWDCRTDCRYYCMVAREEERTKLGDKPVKYHGKWPFRRVYGIQEPVAVALSALNLAMQFHGWVSFFILVYYKLPLRPDKKTYYEYTGLWHIYGILSMNAWLWSAVFHSRAVELTEKLDFSSAVALLGFTLILAILRAFNVRDEATRVMISAPLIAFVTTHIMYLNFYELAYGMNRIVCMGMVIVQLLIWAIWAGASNHPARWKLWAVVVGGGLAMVLETYDFPPYMGYVDAHALWHATRIPITFFWWSFIRDDAEFRTSALLKKSHLSIGTLHLSPTMEEDPDKKKKREDKAREKQLKKEKFLLKQAQEQDRHPSRASKRNGRKNVKGGVEDENPEDCVDPETPSGDKKRMSCQMSKQYSPSAVEKSWYEWWEKSGFFVADASSTKQPFVIVYPPPNVTGALHIGHALTAAIQDTMIRWRRMSGYNALWVPGMDHGGIATQVVVVEKKIMREKQLTRHDLGRERFISEVWKWKHKYGGTILQQLRRLGTSMDWSRECFTMDDRRSNAVTEAFVRLYKHGLIYRDVRLVNWDCVLRTAISDIEVCNVSASMFYLMYSIFSVITCCMKVDYVEIKERTLLNVPGYAKPVEFGVLTKFAYPLEGNLGEIVVATTRIETMLGDTAIAIHPSDDRFCQFHGKYAIHPFNGRKLPIICDTILVDPKFGTGAVKITPAHDPEDFDVGKRHNLDFINIFTDDGKINSNGGFKFEGMPRFKAREAIIEVLQQKGLYRGSESNEMRLGVCSRSNDIVEPLIKPQWYVMSEDLGKQALHALERKKLDIIPKQFTADWKRWLGNIHDWCISRQLWWGHQIPAWYVMLEDDTLQEYGAYEDHWIVARNEKEAQEEASLRYNGKKFHLRQDPDVLDTWFSAGLYPLSVLGWPDVTEDLRAFYPTSVLETGHDIIFFWVARMVMLGMNLGGDVPFRKIYLHPMIRDAHGRKISKSLGNVIDPIEVINGISLEGLHKRLEDSNLDPKELTVARAGQKKDFPDGIDECGADALRFALVSYMAQSDKINLDIKRVVGYRQWCNKLWNAVRFAMTKLGDDYTPPAKLNPDVLPFSCQWILSVLNKTISKTIKALESFEFSNATSAVYSWWQYQLCDVFIEVVKPYFTGNDPKFASERIFAKDTLWFCLDNGLRLLHPFMPFVTEELWQRLPSPMECKREESIMISSYPSPVECWNNERVEDEMALLESAVKSLRSLSNERHERRPAFALCQTQMVTKIINNYKLEIVTLSNLSSLTVINENDPVPSGYAMSLVNESLSVYVEPQGNIFSEAGQEQIQKHIQELRKQIERLEKTINAPAYEDKVPSHIQDGNRKKLESLLKKLDTFKM 1404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00594 1404 PANTHER BNAA08G31530D PROTEIN 641 1403 - -
Cca08g00594 1404 Hamap Valine--tRNA ligase [valS]. 431 1403 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cca08g00594 1404 SUPERFAMILY Nucleotidylyl transferase 430 1098 - -
Cca08g00594 1404 CDD ValRS_core 464 1088 - -
Cca08g00594 1404 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 663 813 IPR009008 GO:0002161|GO:0006418
Cca08g00594 1404 Coils Coil 1350 1373 - -
Cca08g00594 1404 Coils Coil 1253 1273 - -
Cca08g00594 1404 TIGRFAM valS: valine--tRNA ligase 667 1392 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cca08g00594 1404 Pfam Valyl tRNA synthetase tRNA binding arm 1350 1400 IPR019499 GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438
Cca08g00594 1404 Pfam Anticodon-binding domain of tRNA ligase 1134 1275 IPR013155 GO:0004812|GO:0006418
Cca08g00594 1404 Pfam Per1-like family 70 330 IPR007217 GO:0006506
Cca08g00594 1404 Gene3D HUPs 919 1038 IPR014729 -
Cca08g00594 1404 Pfam tRNA synthetases class I (I, L, M and V) 444 1088 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca08g00594 1404 MobiDBLite consensus disorder prediction 377 430 - -
Cca08g00594 1404 PANTHER BNAA08G31530D PROTEIN 354 622 - -
Cca08g00594 1404 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 1100 1341 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca08g00594 1404 Gene3D - 1341 1404 IPR037118 -
Cca08g00594 1404 PANTHER VALYL-TRNA SYNTHETASES 641 1403 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cca08g00594 1404 PANTHER VALYL-TRNA SYNTHETASES 354 622 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cca08g00594 1404 Gene3D HUPs 432 652 IPR014729 -
Cca08g00594 1404 Gene3D - 664 808 IPR009008 GO:0002161|GO:0006418
Cca08g00594 1404 MobiDBLite consensus disorder prediction 377 392 - -
Cca08g00594 1404 CDD Anticodon_Ia_Val 1088 1227 IPR033705 -
Cca08g00594 1404 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 472 483 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca08g00594 1404 PRINTS Valyl-tRNA synthetase signature 465 476 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cca08g00594 1404 PRINTS Valyl-tRNA synthetase signature 818 831 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cca08g00594 1404 PRINTS Valyl-tRNA synthetase signature 701 718 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cca08g00594 1404 PRINTS Valyl-tRNA synthetase signature 964 982 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cca08g00594 1404 PRINTS Valyl-tRNA synthetase signature 933 954 IPR002303 GO:0000166|GO:0004832|GO:0005524|GO:0006438
Cca08g00594 1404 Gene3D - 1039 1278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00594 Cca-Chr8 10077724 10101080 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00594 K01873 - gmx:100798111 1664.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00594 08 10077724 10101080 Cca08g00594 08 10077724 10101080 ECH