Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00577 ATGGCTGATTCAGCATCATGGTGTTGTGCCATGGCACTATTGTGTCTAATACTATTAGGGTCCATGAGGGAGAGCCATGTGCCGGAAGAGGATGACGCCGCCACCGTTGTTGCCGCCACGAGAGGGCAGAGCAACCTCTTTGAACGGCCATGTGATGAGATATATGTGGTGGGAGAAGGGGAGACCCTACACACCATAAGTGACAAGTGTGGTGACCCTTTTATTGTTGAAAGAAACCCTCATATTTATGACCCTGATGATGTTTTCCCTGGCCTTGTCATCAAAATCACCCCCACATACACCAACACTAAGAAGAGGTAG 321 0.4891 MADSASWCCAMALLCLILLGSMRESHVPEEDDAATVVAATRGQSNLFERPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIYDPDDVFPGLVIKITPTYTNTKKR 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00577 106 PANTHER EMBRYO SAC 1 1 102 - -
Cca08g00577 106 Gene3D LysM domain 47 106 IPR036779 -
Cca08g00577 106 PANTHER LYSM DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 1 102 - -
Cca08g00577 106 CDD LysM 54 96 IPR018392 -
Cca08g00577 106 Pfam LysM domain 55 97 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00577 Cca-Chr8 9720063 9720383 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00577 - - gmx:106794425 183.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00577 08 9720063 9720383 Cca08g00577 08 9720063 9720383 ECH