Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00553 ATGGCCATAGAGTGCATGACAAATATACAATCCATGCCTCAACCACAAAAGCAGAACAAACACACAGAAGATGAAGCACCATTGGTTTTTGATGCCTCACTTTTGAGTCACGAACTCCACCTACCAAAGCAATTCATTTGGCCTGATGAGGAGAAGCCATGCTTGAATGTGCCTGAGCTTGTTATGCCCCTAATTGACTTAAGGGGGTTCCTCTCTAGTGACCCTATTGCAACAATCGAGGCTGCAAGGTTGGTTGGTGAGGCATGTCAAAAGCATGGTTTCTTCCTTGTGGTGAACCATGGAATTGATGCCAACTTGATCTCCCATGCTCATGGCTACATGGATGACTTTTTTGAGCTTCCCCTATCTCAGAAACAGAGGGCTCAGAGGAAAACAGGAGAACACTATGGCTATGCTAGTAGCTTCACTAGCAGATTCTCTTCCAAGCTTCCATGGAAAGAGACACTCTCTTTTCAATTCTCAGCTGAGGATAACTCATCCACTCTTGTGAAAGACTACTTGTGCAACACATTGGGCAAAGAGTTTGAGCAGTTTGGGAAGGTGTACCAAGACTATTGTGATGCCATGAGTAACCTTTCTTTGGGGATAATGGAGCTTTTGGGAATGAACCTTGGAGTAGGCAAAGAATATTTTAGGGAATTATTTGAAGAGAATAACTCAATAATGAGACTCAATTACTACCCTCCTTGTCAAAAACCAGACCTCACTTTGGGCACAGGACCTCATTGTGACCCAACATCTTTGACCATTCTTCACCAGGATCAAGTGGGTGGCTTCCAAGTTTTTGTTGACAATGAGTGGCATTCCATTAGCCCAAATTCTAATGCTTTTGTTGTCAACATTGGTGACACTTTCATGGCTCTATCAAATGGGAGGTACAAGAGTTGTTTGCATAGGGCAGTGGTGAACAGCAAGACAACAAGAAAATCTCTTGCTTTCTTTTTGTGTCCAAAGGGTGATAAGGTGGTTAGTCCACCAAGTGAATTGGTGGATGAATTGACGCCAAGGGTGTACCCAGATTTTACATGGCCTATGTTTCTAGAGTTCACTCAGAAACATTACAGAGCTGACATGAAAACTCTCGAGGCATTCACTAACTGGCTTCAACAGAAAAGAAGCTGA 1143 0.4322 MAIECMTNIQSMPQPQKQNKHTEDEAPLVFDASLLSHELHLPKQFIWPDEEKPCLNVPELVMPLIDLRGFLSSDPIATIEAARLVGEACQKHGFFLVVNHGIDANLISHAHGYMDDFFELPLSQKQRAQRKTGEHYGYASSFTSRFSSKLPWKETLSFQFSAEDNSSTLVKDYLCNTLGKEFEQFGKVYQDYCDAMSNLSLGIMELLGMNLGVGKEYFRELFEENNSIMRLNYYPPCQKPDLTLGTGPHCDPTSLTILHQDQVGGFQVFVDNEWHSISPNSNAFVVNIGDTFMALSNGRYKSCLHRAVVNSKTTRKSLAFFLCPKGDKVVSPPSELVDELTPRVYPDFTWPMFLEFTQKHYRADMKTLEAFTNWLQQKRS 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00553 380 PRINTS Isopenicillin N synthase signature 85 102 - -
Cca08g00553 380 PRINTS Isopenicillin N synthase signature 249 270 - -
Cca08g00553 380 PRINTS Isopenicillin N synthase signature 284 310 - -
Cca08g00553 380 PANTHER ISOPENICILLIN N SYNTHASE-RELATED 18 377 - -
Cca08g00553 380 SUPERFAMILY Clavaminate synthase-like 36 364 - -
Cca08g00553 380 Pfam 2OG-Fe(II) oxygenase superfamily 226 324 IPR044861 -
Cca08g00553 380 Pfam non-haem dioxygenase in morphine synthesis N-terminal 63 164 IPR026992 -
Cca08g00553 380 Gene3D - 34 363 IPR027443 -
Cca08g00553 380 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 224 324 IPR005123 -
Cca08g00553 380 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 18 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00553 Cca-Chr8 9056141 9058097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00553 39 374 Glycosyltransferase AT5G59530 28.242 1.04e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00553 K05282 - gmx:100305378 712.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00553 08 9056141 9058097 Cca08g00553 08 9056141 9058097 ECH