Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00537 ATGAGGTGGTACAGAAGGGGAAAGCTCGCTCTCGATCATTTTCACAGCTTGGCTTCGAGGGTTGCGCCTCAAAAACCAATTTTTCAGCGTAGTTCGAGGATTTGCCCATCTGGGTATGTGGATTCAGGTTCAAAGGGAGCTAGCTTTAATGGGTTCTCTACGTTTTGTTCAATTTCTAAGAGATTAGGCATACAAGGTGTTGTTGGAGTTACCAGGAACCATCGCAACCCATCTCTTTGTGGGGCTAAGAGATTTTACTATGTGGATCCTCAAAATGTGCACCATTTCAAGCCAAGAGGGCCAAAGCGTTGGTTTCAGAATCCTAGGCATGTTTTCATTGTTGTGATGGTTGGTTCAGGGGTTTTTGTCACTGTGTATTTTGGGAACTTGGAAACAGTTCCTTACACCAAGCGAACCCATTTGATTCTGTTGTCGAAAGCCATGGAGAGGAAGGTTGGGGAGAGCCAGTTTGAGAAGATGAAGGTTGCTTTTAAGGGGAAGATATTGCCTCCTATACATCCTGAAAGTGTGAGGGTGACCATGATAGCGAAGGATATAATCGATGCATTGCAGAGAGGGTTGAGAAAGGAGCAGGTTTGGAGTGATTTGGGGTATGCATCGGAGAACGTTGGGCTGGTCGAAGGAGATGGAAGGGAGACACTGAATGCATTGGCTGGGAGTGAACAGAAGCTTGAAGGGATTTGGCACAAGGAGGATGAGATTCTTGATGACAAATGGGTTCAGCAAAGCAGGAAAAAGGGTCAGGAAAGAGGGTCACAGGCTGCTACATCGCACTTGGATGGATTGAATTGGGAAATTTTGGTGGTAAATGAGCCTGTTATTAATGCCTGCTGCTTACCTGGTGGGAAGATAGTTGTGTTCACTGGTTTGTTAGAGCATTTCAATAGTGATGCAGAGATAGCAACTATTATTGGACATGAGGTTGGGCATGCTGTGGCAAGACACAGTGCAGAGGGGATTACAAAGAACTTGTGGTTCGCAATTCTACAGTTGATACTTTATCAATTTGTCACACCTGATATTGTCAACACAATGTCATCCCTTTTCTTGCACCTACCTTTCTCCCGGAGGATGGAATTAGAAGCTGATTACATTGGGCTGCTGTTAATTGCATCAGCTGGCTATGATCCCCGGGTGGCACCCAAAGTGTATGAGAAATTGGGAAAAATCTCAGGTGATTCTACCCTTAGGGATTATCTCTCTACTCATCCTTCTGGAAGAAAAAGAGCAGAATTGCTGGCCCAAGCTAAGATAATGGAAGAAGCATTTACTATATATAAAGATGTAAGAGCCGGACGTGGGGTTGAAGGTTTTCTTTAG 1341 0.4467 MRWYRRGKLALDHFHSLASRVAPQKPIFQRSSRICPSGYVDSGSKGASFNGFSTFCSISKRLGIQGVVGVTRNHRNPSLCGAKRFYYVDPQNVHHFKPRGPKRWFQNPRHVFIVVMVGSGVFVTVYFGNLETVPYTKRTHLILLSKAMERKVGESQFEKMKVAFKGKILPPIHPESVRVTMIAKDIIDALQRGLRKEQVWSDLGYASENVGLVEGDGRETLNALAGSEQKLEGIWHKEDEILDDKWVQQSRKKGQERGSQAATSHLDGLNWEILVVNEPVINACCLPGGKIVVFTGLLEHFNSDAEIATIIGHEVGHAVARHSAEGITKNLWFAILQLILYQFVTPDIVNTMSSLFLHLPFSRRMELEADYIGLLLIASAGYDPRVAPKVYEKLGKISGDSTLRDYLSTHPSGRKRAELLAQAKIMEEAFTIYKDVRAGRGVEGFL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00537 446 CDD M48C_Oma1_like 267 429 - -
Cca08g00537 446 PANTHER METALLOENDOPEPTIDASE OMA1, MITOCHONDRIAL 83 438 - -
Cca08g00537 446 Pfam Peptidase family M48 261 421 IPR001915 GO:0004222|GO:0006508
Cca08g00537 446 Gene3D Metalloproteases ("zincins"), catalytic domain 250 326 - -
Cca08g00537 446 PANTHER METALLOENDOPEPTIDASE OMA1 83 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00537 Cca-Chr8 8743182 8747121 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00537 K23010 - gmx:100799127 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00537 08 8743182 8747121 Cca08g00537 08 8743182 8747121 ECH