Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00522 ATGAGCTTCGCTGCCTACAAGATGATGCACTGCCCCACCGGCATCGACAACTGCGCCGCCGGCTTCCTCACCCATTCCCGCGCCGAATTCGTCCCGCTCCAGCCCGACGACCTCGACGCCGAGTGGCCCTCCCGCCCCCACCCCCACCGCGCTCCTCTCCCCAACCTCGTCGTCACCGCCGCCAACGTCCTCGAGCTCTACATCGTCCGCATCCAGGACGACCAGCCGCCCAAGCCCGTCGACTCCCGCCGTGGCACCCTCCTCGACGGCATCGCCGGCGCCTCCCTCGAGCTCGTTTGCCACTACAGGTTGCATGGTAATGTTGAAACCATGGCTGTGTTGAGCATCGGAGGTGGTGATGCTTCTAGGAAGAGAGATTCTATCATCTTAACTTTTGCAGATGCAAAGATTTCAGTTCTTGAGTATGATGATTCTATTCATGGACTTCGTACCAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTGCATCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCAGTGGTAAAGGTTGATCCACAAGGCAGGTGTGGCGGAGTTCTTATCTATGATTTGCAAATGATAATACTAAAGGCTACTCAGGCTGGTTCTGGTTTGGTTGGGGAGGAGGATGCCTTGGGTTTTTCAGGAGCTGTTGCTGCTCGCATTGAGTCATCTTATATGATAAACCTACGTGACTTGGATATGAGGCATGTAAAAGATTTTACATTTGTTCATGGCTATATTGAACCTGTAATGGTAATTTTGCATGAACGTGAGCTCACATGGGCTGGGCGTGTCTCATGGAAACATCATACTTGCATGATATCAGCACTTAGTATCAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTCCCGCATGATGCTTACAAGCTTCTTGCAGTGCCCTCACCAATAGGTGGTGTTCTTGTAATCGGTGCTAACACTATTCATTATCACAGTCAGTCTGCTTCATGTGCATTGGCCTTGAACAGTTATGCTGTTTCACTTGACAGTAGTCAGGATATACCAAGATCAAGTTTCAATGTGGAGCTTGATGCTGCCAATGCAACTTGGTTGTTGAGTGATGTGGCCTTGCTGTCAACAAAAACTGGTGAACTGCTATTGCTTACGCTTGTTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGCGTTACAACAATTGGAAATTCTCTATTTTTTCTCGCCAGTCGATTAGGGGACAGTATGCTGGTGCAATTTTCTTCTGGATCAGGTGTTTCCATGTTGTCATCCAATCTAAAAGAAGAGGTTGGTGATATTGAAGCAGATACTCCATCAAAGAGATTGCGGAGGTCACCTTCTGATGGTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGGTCTGCTCCAAATAGAACAGAATCAACACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCATTGGTTAATGTTGGTCCTTTGAAAGATTTCTCATATGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAATTATGAATTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTTTGTGTGTTCTGCGCCAATCGATTCGTCCAGAAGTGATTACTGAGGTAGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGCTCTCATAATGCTGATTCTTCTAAGTTGGCTGATGATGATGATGAGTATCATGCTTACCTTATTATAAGTTTGGAGGCTCGTACTATGGTACTAGAAACAGCTGATCTTCTGAGTGAGGTTACTGAAAGTGTTGACTATTATGTTCAAGGAAAAACACTTGCTGCAGGGAATTTATTTGGAAGGCGTCGAGTTATACAAGTCTATGAACGTGGTGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGATGTAAGCTTTGGAGCTTCTAATTCAGAATCTGGCTCTGCTGGTTCTGCATCTGAGAGTGCTATTGCACTTTCTGTTTCTATAGCTGATCCATTTGTCTTACTAAGAATGAGTGATGGAAGCATTCGACTTCTGATTGGAGATCCTAGTACCTGCACCATTTCTGTCACTTCTCCAGCTTCATTCGAGAGTTCCAAGGGATCAGTTTCTTCATGTACACTGTACCATGATAAAGGACCTGAGCCTTGGCTAAGGAAGACTAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCTATTGATGGCACTGATGGTGCAGCTCAGGACCATGGGGATATTTATTGTGTGGTTTGTTATGATAATGGTAACCTTGAAATATTTGATGTGCCCAATTTCAATTGTGTCTTTTCTGTGGAAAATTTTATGTCTGGAAAGAGCCATATTGTTGATGCTCTGATGAAAGAGGTACAATTAGATTCTAAAAAAGGTGATAAAGATTCCGATGGAGTGACCAGTCAAGGGAGGAAGGACAATGTACCGAATATGAAGGTTGTAGAGTTGACCATGCAGAGATGGTCTGGGCAGCATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACTATTCTGTGTTACCATGCTTACCTTTATGAAAGTCCAGATGGCACTTCTAAAGTTGAGGATTCAGTATCTGCCGGAGGATCCACCGGCCTCAGCAATACCATTGTTTCCAGGCTTAGAAATTTAAGATTTGTTCGTGTGCCCTTGGAGGCATATGCCAGGGAGGAGACATCAAATGGATCTTCCTGTCAACAAATTACTATTTTCAAGAACATTGGTAGTTATCAAGGATTCTTTCTATCAGGGTCAAGACCAGCTTGGGTTATGGTGTTGAGAGAACGGCTTCGTGTTCATCCACAGCTTTGCGATGGATCTATTGTTGCTTTTACTGTCCTTCACAACGTGAACTGCAATCACGGGCTTATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTTCAGAAAATTCCACTAAAAGCCACTCCGCATCAAGTAACATACTTTGCAGAGAAGAATTTATATCCACTTATTGTCTCATTTCCTGTTCTTAAGCCACTGAATCAAGTTATTTCTCTGGTTGACCAAGATGTCAACCATCAGAATGAGAATCAGAATATGAATTCCGATGAGCAAAACCGCATTTATCCTATTGATGAATTTGAGGTTCGTATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAGGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTCACTGTGAGGATGGTTACACTGTTGAACACTACCTCGAAAGAAAATGAAACACTTTTAGCCGTTGGTACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGTATCCTCCTCTTCTCTTTGGGAAAAAATACCGATAATCCACAAACTCTGGTTTCAGAGGTTTACTCAAAGGAACTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAGGGTCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCACAAATGGAGTGGCACTGAGTTGAATGGTATTGCATTTTTTGATGCGCCACCATTACATGTTGTGAGCTTGAATATTGTAAAGAACTTTATCCTTATTGGTGACATCCATAAAAGCATATACTTTCTAAGTTGGAAAGAACAGGGGGCTCAACTGAGCTTATTAGCCAAGGATTTTGGTTCTCTGGATTGTTTTGCGACAGAATTTTTGATTGACGGAAGTACTCTTAGTCTAATGGTTTCGGATGATAACAGAAACATCCAGCAGATTTTTTACTATGCACCAAAGATGTCGGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCCCATGTAACTAAATTTCTAAGGTTGCAGATGCTATCCACTTCTGATCGAGCTGGTTCTGCTCCAGGATCAGATAAAACCAATCGTTTTGCCTTATTATTTGGTACCTTGGATGGTAGTATCGGTTGCATTGCACCTCTTGATGAACTCACATTTCGCAGACTACAGTCTTTGCAGAGAAAGCTTGTTGATGCTGTACCCCATGTTGCTGGCCTGAATCCCAGAGCTTTCAGACAATTTCGGTCAAATGGAAAGGCCCATCGGCCTGGCCCTGACAGTATAGTTGACTGCGAACTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCAAACCAGATTGGAACAACTCGATCACAAATTCTCTCAAATCTAAGTGATCTGTCTCTTGGGACAAGCTTCTTGTGA 4359 0.4363 MSFAAYKMMHCPTGIDNCAAGFLTHSRAEFVPLQPDDLDAEWPSRPHPHRAPLPNLVVTAANVLELYIVRIQDDQPPKPVDSRRGTLLDGIAGASLELVCHYRLHGNVETMAVLSIGGGDASRKRDSIILTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGVLIYDLQMIILKATQAGSGLVGEEDALGFSGAVAARIESSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNSYAVSLDSSQDIPRSSFNVELDAANATWLLSDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGVTTIGNSLFFLASRLGDSMLVQFSSGSGVSMLSSNLKEEVGDIEADTPSKRLRRSPSDGLQDMVSGEELSLYGSAPNRTESTQKSFSFAVRDSLVNVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKLADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESGSAGSASESAIALSVSIADPFVLLRMSDGSIRLLIGDPSTCTISVTSPASFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCYDNGNLEIFDVPNFNCVFSVENFMSGKSHIVDALMKEVQLDSKKGDKDSDGVTSQGRKDNVPNMKVVELTMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSVSAGGSTGLSNTIVSRLRNLRFVRVPLEAYAREETSNGSSCQQITIFKNIGSYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDVNHQNENQNMNSDEQNRIYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNTTSKENETLLAVGTAYVQGEDVAARGRILLFSLGKNTDNPQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWSGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDNRNIQQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGSAPGSDKTNRFALLFGTLDGSIGCIAPLDELTFRRLQSLQRKLVDAVPHVAGLNPRAFRQFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIANQIGTTRSQILSNLSDLSLGTSFL 1452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00522 1452 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 126 698 IPR018846 -
Cca08g00522 1452 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 2 1443 - -
Cca08g00522 1452 Pfam CPSF A subunit region 1084 1417 IPR004871 GO:0003676|GO:0005634
Cca08g00522 1452 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1 2 1443 - -
Cca08g00522 1452 Gene3D - 973 1359 IPR015943 GO:0005515
Cca08g00522 1452 Gene3D - 50 444 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00522 Cca-Chr8 8469455 8497553 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00522 K14401 - gmx:100785543 2708.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00522 08 8469455 8497553 Cca08g00522 08 8469455 8497553 ECH