Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00517 ATGCCCACGTCCCAACCCACTATATATTGTATCCACCTTGTTCATTTTCACGAGAAAAAAGGGTCGGAAAATCACAGCGACACTCTGCGATTCGTGACAATGGCAACGATCAAGGTCATCAAGGCTCGCCAGATCTTCGACAGCCGTGGGAATCCAACCGTCGAAGTTGATGTTACTCTTAGCGATGGAATCTTCGCCAGAGCCGCTGTGCCTAGCGGTGCTTCAACAGGTGTCTATGAAGCTCTGGAATTGAGGGATGGAGGATCAGACTACCTCGGGAAAGAAAGAAAGAGAGCATATTCGTCTCGTGGGCCCCACTCGCATCGGAGCAAGAGTCTCACCATGCGCTTTAGAACCCCAGCTCAGCCGTCCACGTCATCCTCCTTTTCCACGCCCAACGGTCCAGATTCAGCGGCCTCTTCCGTGATGCCCACGTCCCAACCCACTATATATTGTATCCACCTTGTTCATTTTCACGAGAAAAAAGGGTCGGAAAATCACAGCGACACTCTGCGATTCGTGACAATGGCAACGATCAAGGTCATCAAGGCTCGCCAGATCTTCGACAGCCGTGGGAATCCAACCGTCGAAGTTGATGTTACTCTTAGCGATGGAATCTTCGCCAGAGCCGCTGTGCCTAGCGGTGCTTCAACAGGTGTCTATGAAGCTCTGGAATTGAGGGATGGAGGATCAGACTACCTCGGGAAAGGTGTTCTCAAGGCTGTGGAGAATGTGAATAAAATTATAGCACCTGCTTTGGTTGGCAAGGACCCAACCAAGCAGACTGAACTTGACAACTTTATGGTACAGCAGCTTGATGGAACTGTTAATGAATGGGGGTGGTGCAAGCAGAAGCTTGGAGCCAATGCTATATTGGCAGTGTCACTTGCTGTCTGTAAGGCCGGTGCTGCAGTGAAGAAAATTCCACTGTACAAGCACATCGCCAATCTGGCTGGTAACAAGAATTTGGTACTGCCTGTGCCTTCATTCAATGTTATCAATGGAGGCTCACATGCAGGAAATAAGCTAGCAATGCAGGAGTTTATGATTCTCCCTCCCGGAGTTGCATTGTTGTCCCATTTTCTTCTTCTTCAACCTTGGAGTAGCTCGGAGTTCGTCATTCACCTCGTTTTGAGCGTGAGAGTGAGATGCCTCTGGAAGGCTGATGCTGAGCATGGACTTTTGGGCTTAATGAGAGCTGAGTTGTGCCTCTAA 1215 0.4955 MPTSQPTIYCIHLVHFHEKKGSENHSDTLRFVTMATIKVIKARQIFDSRGNPTVEVDVTLSDGIFARAAVPSGASTGVYEALELRDGGSDYLGKERKRAYSSRGPHSHRSKSLTMRFRTPAQPSTSSSFSTPNGPDSAASSVMPTSQPTIYCIHLVHFHEKKGSENHSDTLRFVTMATIKVIKARQIFDSRGNPTVEVDVTLSDGIFARAAVPSGASTGVYEALELRDGGSDYLGKGVLKAVENVNKIIAPALVGKDPTKQTELDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAAVKKIPLYKHIANLAGNKNLVLPVPSFNVINGGSHAGNKLAMQEFMILPPGVALLSHFLLLQPWSSSEFVIHLVLSVRVRCLWKADAEHGLLGLMRAELCL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00517 404 SMART Enolase_N_3 179 314 IPR020811 -
Cca08g00517 404 SMART Enolase_N_3 37 174 IPR020811 -
Cca08g00517 404 PANTHER ENOLASE 176 356 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Cca08g00517 404 Gene3D - 308 362 IPR036849 -
Cca08g00517 404 Gene3D - 31 102 IPR029017 -
Cca08g00517 404 PRINTS Enolase signature 212 226 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Cca08g00517 404 PRINTS Enolase signature 344 357 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Cca08g00517 404 PRINTS Enolase signature 287 303 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Cca08g00517 404 PANTHER ENOLASE 34 99 IPR000941 GO:0000015|GO:0000287|GO:0004634|GO:0006096
Cca08g00517 404 SUPERFAMILY Enolase N-terminal domain-like 179 318 IPR029017 -
Cca08g00517 404 SUPERFAMILY Enolase C-terminal domain-like 322 355 IPR036849 -
Cca08g00517 404 MobiDBLite consensus disorder prediction 96 143 - -
Cca08g00517 404 Pfam Enolase, C-terminal TIM barrel domain 323 358 IPR020810 -
Cca08g00517 404 Gene3D - 176 306 IPR029017 -
Cca08g00517 404 SUPERFAMILY Enolase N-terminal domain-like 37 100 IPR029017 -
Cca08g00517 404 Pfam Enolase, N-terminal domain 179 314 IPR020811 -
Cca08g00517 404 Pfam Enolase, N-terminal domain 37 100 IPR020811 -
Cca08g00517 404 MobiDBLite consensus disorder prediction 114 143 - -
Cca08g00517 404 PANTHER ENOLASE 34 99 - -
Cca08g00517 404 PANTHER ENOLASE 176 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00517 Cca-Chr8 8381793 8397540 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00517 K01689 - ccaj:109793775 351.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00517 08 8381793 8397540 Cca08g00517 08 8381793 8397540 ECH