Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00512 ATGGGAAACACGTTCTGCCTCTTCTGTGGTTGCGTCGGTCAATCCAGCGTCGGCGTCGTCGAACAGTGGGGTCGCTTCCACCGCCTCGCCCAACCAGGCTTCCACCTCTTCAACCCCCTCGCCGGCGAATGCCTCGCCGGAATCCTCTCCACCAGGATCTCCTCCCTCGACGTCCGCATCGAAACCAAAACCAAGGACAATGTGTTTGTGCAGTTGCTGTGTTCAATTCAATACCGAGTCATTAAGGAAAACGCGGACGATGCTTTCTACGAGTTGCAAAACCCTCAGGAGCAGATCCAGGCTTATGTTTTTGATGTCACGCGTGCGATTGTTCCCAGAATGAACTTGGATCAGCTATTTGAGCAGAAGGGTGAGGTTGCCAAAGCTGTATTGGAGGAGCTTGAAAAGGTGATGGGAGAATATGGATATAGTATAGAGCACATACTCATGGTTGATATTATACCTGATCCTGCTGTGCGTAAGGCAATGAATGAGATCAATGCAGCGCAAAGGATGCAACTTGCTAGCGAGTACAAAGGAGAAGCTGAAAAGGTGTTGCTAGTTAAAAAAGCAGAGGCTGAAGCCGAAGCCAAGTATTTGGGTGGGGTTGGTGTGGCCAGGCAGCGACAGGCTATCACAGATGGCTTGAGAGAGAACATCCTCAACTTCTCTCACAAGGTAGAGGGCACTAACGCTAAGGAGGTGATGGATCTTATCATGATTACTCAGTACTTTGACACAATCAAAGACCTTGGGAACTCATCAAAGAACACCACTGTTTTTATACCCCATGGACCTGGCCACGTCAGGGATATTGGTGAGCAGATACGCAATGGACTGATGGAAGCATCTAGTGCTCAAGTAAATATGGAGGAGTGA 879 0.4915 MGNTFCLFCGCVGQSSVGVVEQWGRFHRLAQPGFHLFNPLAGECLAGILSTRISSLDVRIETKTKDNVFVQLLCSIQYRVIKENADDAFYELQNPQEQIQAYVFDVTRAIVPRMNLDQLFEQKGEVAKAVLEELEKVMGEYGYSIEHILMVDIIPDPAVRKAMNEINAAQRMQLASEYKGEAEKVLLVKKAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTNAKEVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMEASSAQVNMEE 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00512 292 Pfam SPFH domain / Band 7 family 12 183 IPR001107 -
Cca08g00512 292 CDD SPFH_like_u4 11 280 - -
Cca08g00512 292 SUPERFAMILY Band 7/SPFH domain 48 172 IPR036013 -
Cca08g00512 292 PANTHER STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL 1 288 - -
Cca08g00512 292 Gene3D Band 7 domain 46 169 IPR036013 -
Cca08g00512 292 SMART PHB_4 7 167 IPR001107 -
Cca08g00512 292 PANTHER HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 4 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00512 Cca-Chr8 8276396 8279032 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00512 - - gmx:100788194 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00512 08 8276396 8279032 Cca08g00512 08 8276396 8279032 ECH