Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00480 ATGAAGACTTATCGGTTGAGGTGCTTCTTTCGGCCTCTTGCTAGGCCGAAGCTCAAGTATCCAGCACCAGGGGCTCCACAGTTGGCGAAGAGGGTAAAGGAACTACTCTTGGCATCAGGGTTGAGCCATGTGGATGAAGATAAGAAACGTGGGCTTGACCATGGTGCATGGGTGCCTCTGTACTTGATGTACCCAGAGGCAGATATCCCAGTGTGTCAGCTCTCAGTTTCATCCAACAAAGGTGCTACTTATCACTATAACATGGGAAAAGCTTTGGCCCCTCTTAAGGATGAAGGTGTTCTAATCATTGGCTCTGGCAGTGCCACCCACAACCTCAGAGCCATTGGACCTCGTGGTACCCCACCTCCTCCATGGGCCACGGCATTTATGTCCTGGTTAAAAACCTCTCTTCTTGATGGCAGATACGAGGATGTAAATGAATACGAAGAGAAGGCCCCGTATGCAAAAATGAATCACCCTTGGCCAGATCACTTTTTCCCATTGCATGTGGCCATGGGAGCTGCTGGTGAAAACGCAAAGGCCAAAGTTGTACACGATACTTGGGACGCTGGTTCTATATCTTATGCTTCTTTCGGGTTTACAGCAGCTAATAGTTGA 618 0.4887 MKTYRLRCFFRPLARPKLKYPAPGAPQLAKRVKELLLASGLSHVDEDKKRGLDHGAWVPLYLMYPEADIPVCQLSVSSNKGATYHYNMGKALAPLKDEGVLIIGSGSATHNLRAIGPRGTPPPPWATAFMSWLKTSLLDGRYEDVNEYEEKAPYAKMNHPWPDHFFPLHVAMGAAGENAKAKVVHDTWDAGSISYASFGFTAANS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00480 205 SUPERFAMILY LigB-like 17 200 - -
Cca08g00480 205 PANTHER AROMATIC RING-OPENING DIOXYGENASE, CATALYTIC PROTEIN 14 205 - -
Cca08g00480 205 Pfam Catalytic LigB subunit of aromatic ring-opening dioxygenase 16 200 IPR004183 GO:0006725|GO:0008198|GO:0016491
Cca08g00480 205 Gene3D - 9 201 - -
Cca08g00480 205 CDD 45_DOPA_Dioxygenase 17 200 IPR014436 GO:0008270|GO:0016701
Cca08g00480 205 PANTHER UNCHARACTERIZED 14 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00480 Cca-Chr8 7860040 7876306 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00480 K15777 - gmx:100797161 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00480 08 7860040 7876306 Cca08g00480 08 7860040 7876306 ECH