Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00408 ATGGCAAGGAAGATGCATGGTGCCCCTCAAAAGAAAGGTAATGATAGTCCAAAAGTTTCAGAAGCAAGAGAGGATTCCATATCAACAACATATCAACAACAAAATAAATTCACATCTTTGGAGGATTGTCAAGAGTCTTCTCTTCCAAAGATTAACCCTGATAGTAGGTGTGCCATCATTACAATCCTTTACAGTGAGGATCATGGAATCTGGAAAGCTTTTGACGTACCAGTGCAGATTTCCCATCACATTAACTTAGCTTCTGCTGTAACTATGGATGGTCTGCAACTTCTAATCCCTCCAACGATTAATAGGTTGAAGATTGATCAATGTAAAGGGCCTAGAGTGCCTCTTCCTCCCTATGCTTATTCAGCAAAATCATGTACAAAGAAAGGCTTTACTGGTTCAAATGTGCACCGTCGATGCCAAAACAAGATTGCTAACAGAGCTTCTAAACTGAATGAACACCCTGACAATTCTTGTTCTCAAAGTTCAATAGTCTGTGGCCCTGCCTTGTTCCCTGGTAATTCTACTACAGTTAATTCATCTGATAAGGGCACAAGTCATTCCAAGGAAGATGACAAATCTTTAAAGAAAAACTCAAGAAAAAGGGTTAGAAAGAAAGATAGACGGAGTAAGAAGAAGTCAAGTGACAGTGGCATTACTGAACATGAAGTTCTTAATGAGGAATATGTCTCTGTAAGTATGACTTCTGAAACCTGTAGCAGCAATGATGTGGATAAGGAGTGTGTGGCTGAATTTTCAACTTCTGATAATATATTAATAAGATCTGATTGTAAAAGGAATGAAATGAACAGCAACATCAATGTTATGCAGGCACCTAATAGTTGCAACTCTTGTGTTGATCAGGAGGGGATGTCAAAAGCCTTTGCTCCTATTGTTCAAAGTTCCGCTGGAGAATGTGCCACATTTGAATCCAAGAACCAGCTCCAAGATAGGGGCACTGATTTTGCAGTCATTGATAGAGAAATAAAGGACATCCAACATGTTGAGCCATGCTGTTTTAATGATATACAAGACTCTTTGGTGCTGGATTCAGTTTCAGTTGGTTCCAGAAGTGATGAAAGTATCAATGCTGTTGGTATAGGAAAACAGTCCAACAAGGCAAATTGCACAAACACTTCAGATTCGGGAGATGGATATTTTCTTGGTCCAAACTTAACGAATGGTATTCACAAAAACTGTGAACATGCTGAGGGGATTAAGCATGGTGGTCAAAATTGCATCAGTAATGATAAAAGAGTCAAGCAGAAGAGAACAATGTCAAAGAGTTCAAGCTTAAACAAATTTGGGGGCATTGGAGTTTTGCATGGTCGAAAAGGAAAGGAAAACAGTCATTCCGTGTGGCAAAAGGTTCAGAAGAACAGTTCTGATGAATGTAGTGGTGATTTGAAGAAAGTGAACACTACTTTGTCACAAATTGATTCTACTGTGGAAAAGGATCCTTCAGTTATCAAAGATTGTAGTTCTGTTGGTGTAAATGGTGTATCAAAAACTGAGGATAAGAAACACTTGAAAAATAAAATTGGTAGGAAATCAAAAGGTAAAATGGATTCAGTTTCAAAAAAGGGACAAGGCAATTATTCTAAGAAAAATTTCCATTTTAACAAGTCTTTGCCAAATGATCATGGGAAGGTTAGTGTTCAAAAGATTGATATGTTGAATATCTCATCTGATGAAATTGATCAACAAGGATTGAACATTGTCTCTGGATTTAATTCTGATATTAATTGCCTGATGGATGGGGTTCAGACCAATGGATTTGAACAGGTAACATCTGAAATAGTTCAAAGCACACAAATCTGTCTGGAGGAGTCAGATCCACAAAAGGGTGCCTGTCATACAATTGTAAACACAAACAGTGAAAATGTAGACATTGAAGATAGCTCATTGGTAATGCCAGGTGAGAACTTCAATCAATCAAATATGTCCGAGCAGCTGTCTCCAGTGTCTTGTAATCTTGAAGGTGATGAGGTTGGTCAAACAGAGAAAGAAGTTTCTTCTGCAGACTACTATGCACAAAACCACAGTTCTGGACCTACCCTATGGAAATGGATACCAGTCAGCAAAAAGGATACAGGGTTGGAAAAATCTGAATCTAATAGTTCACCACCAGAATATTCTGATACATCCTCTAGTAACAATTTCAACTCTGAAAGCAGCGCTGAACCGGAAGTAGCCTCTTCTGAAAATCTGGATTCTTCACTAAATGCAAGCAGAACATGCTCCGGCCAGATTTACAACAAAGTGTCTTGTCCAGATGAGAAGAAACATAAAATGGGTAGTCAGGTTGCATGTGCATTCACAGAGCACAGGAACAAGCATAAAGTTGCTAATCACATTCTTTTTGAATGTGAAAATCCAGAGATGTTAGAAAATGATTCTTACAGAATAGCTCAAGCCGTGAATGATGCTTGCATGGCACAACTAGCTTGTGAGACTGTACACATGGCTACTGGTGGTCCAGTTGCAGAGTTTGAAAGACTACTTTATTTTTGTAGTCCTGTTATTTGTAAATCACTCAATTCACTTGGTTGCTCATCCTGCTCATGCAACCATGCTGGTGGTGTCTCACTGTGTAGACATGAGATCCCTAACCTATCTTTGGGATGCCTCTGGCAGTGGTATGAAAAACATGGGAGCTATGGGTTAGAGATTAGGGCTCAGGATCTTGAAAATCCAAAAAGAGAAGGAAGTGTTGGTGATTTCCCATTTCGTGCCTACTTTGTCCCTTCTTTATCAGCAGTTCAGTTGTTTAAGAACCGTGAAAACCAATGCATAAACAGCAGTGACAAGCTTCCAAATTGTGAGGATTCAGAGGCATGTGAAATGGTTGACATTTCAAAAAACTCATCTACTGCCAGTCAACATTCTATATTTTCTGTTCTCTTTCCTCAACCTCGCAATCAGGAGGCATGCATTCAACCACCAAAGGAGACAGCTTCTATCAATAATGTATCTATTCCGTCTATCAACTCAACATGCTCTGGTGATGTAGAACTTCTTTTTGAATATTTTGAACTTGAGCAGCCTCAACAAAGACAACCTCTGTATGAAAAGATTCAAGAACTGGTTAGAGGCAATATACCAATCCAATCTACAACTTATGGGGATCCAACCAAACTGGATTCATTAAATCTGAGAGATCTTCACCCTAGGTCTTGGTTCTCAGTTGCATGGTATCCTATTTACCGCATACCAGATGGCAACTTTCGTGCATCTTTTTTGACTTACCATTCCCTTGGGCATTTGGTTCCTAGAAGAACTAGTTCAGATTTGTCTATACTAGGTTCTTGCATAGTATCTCCAGCTGTGGGTCTTCAAAGTTACAATGCCCAGGGAGAATGTTGGTTCCAGATGAAGCCTTCTGCACAGACATCAGAAATGGTGGGCTTAGACCCTTCTTTACTTCTTAAAAAGCGTTTGAGGACACTTGAGGAAACAGCATCTCTCATGGCAAGGGCTGTTGTCAACAAGGGGAAACTAACCTGTACAAACAGACATCCTGATTATGAGTTTTTCTTGTCTAGGCGACGGTATTGA 3564 0.3945 MARKMHGAPQKKGNDSPKVSEAREDSISTTYQQQNKFTSLEDCQESSLPKINPDSRCAIITILYSEDHGIWKAFDVPVQISHHINLASAVTMDGLQLLIPPTINRLKIDQCKGPRVPLPPYAYSAKSCTKKGFTGSNVHRRCQNKIANRASKLNEHPDNSCSQSSIVCGPALFPGNSTTVNSSDKGTSHSKEDDKSLKKNSRKRVRKKDRRSKKKSSDSGITEHEVLNEEYVSVSMTSETCSSNDVDKECVAEFSTSDNILIRSDCKRNEMNSNINVMQAPNSCNSCVDQEGMSKAFAPIVQSSAGECATFESKNQLQDRGTDFAVIDREIKDIQHVEPCCFNDIQDSLVLDSVSVGSRSDESINAVGIGKQSNKANCTNTSDSGDGYFLGPNLTNGIHKNCEHAEGIKHGGQNCISNDKRVKQKRTMSKSSSLNKFGGIGVLHGRKGKENSHSVWQKVQKNSSDECSGDLKKVNTTLSQIDSTVEKDPSVIKDCSSVGVNGVSKTEDKKHLKNKIGRKSKGKMDSVSKKGQGNYSKKNFHFNKSLPNDHGKVSVQKIDMLNISSDEIDQQGLNIVSGFNSDINCLMDGVQTNGFEQVTSEIVQSTQICLEESDPQKGACHTIVNTNSENVDIEDSSLVMPGENFNQSNMSEQLSPVSCNLEGDEVGQTEKEVSSADYYAQNHSSGPTLWKWIPVSKKDTGLEKSESNSSPPEYSDTSSSNNFNSESSAEPEVASSENLDSSLNASRTCSGQIYNKVSCPDEKKHKMGSQVACAFTEHRNKHKVANHILFECENPEMLENDSYRIAQAVNDACMAQLACETVHMATGGPVAEFERLLYFCSPVICKSLNSLGCSSCSCNHAGGVSLCRHEIPNLSLGCLWQWYEKHGSYGLEIRAQDLENPKREGSVGDFPFRAYFVPSLSAVQLFKNRENQCINSSDKLPNCEDSEACEMVDISKNSSTASQHSIFSVLFPQPRNQEACIQPPKETASINNVSIPSINSTCSGDVELLFEYFELEQPQQRQPLYEKIQELVRGNIPIQSTTYGDPTKLDSLNLRDLHPRSWFSVAWYPIYRIPDGNFRASFLTYHSLGHLVPRRTSSDLSILGSCIVSPAVGLQSYNAQGECWFQMKPSAQTSEMVGLDPSLLLKKRLRTLEETASLMARAVVNKGKLTCTNRHPDYEFFLSRRRY 1187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00408 1187 MobiDBLite consensus disorder prediction 178 222 - -
Cca08g00408 1187 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 6 1186 - -
Cca08g00408 1187 Pfam Protein of unknown function (DUF789) 831 1181 IPR008507 -
Cca08g00408 1187 MobiDBLite consensus disorder prediction 508 534 - -
Cca08g00408 1187 MobiDBLite consensus disorder prediction 1 32 - -
Cca08g00408 1187 MobiDBLite consensus disorder prediction 705 740 - -
Cca08g00408 1187 MobiDBLite consensus disorder prediction 663 683 - -
Cca08g00408 1187 MobiDBLite consensus disorder prediction 426 451 - -
Cca08g00408 1187 MobiDBLite consensus disorder prediction 8 22 - -
Cca08g00408 1187 MobiDBLite consensus disorder prediction 701 740 - -
Cca08g00408 1187 MobiDBLite consensus disorder prediction 508 526 - -
Cca08g00408 1187 PANTHER DUF789 FAMILY PROTEIN 6 1186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00408 Cca-Chr8 6203018 6211554 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00408 - - ccaj:109816828 1812.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00408 08 6203018 6211554 Cca08g00408 08 6203018 6211554 ECH