Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00407 ATGGCTCAGAATGGAAATGGAGACAATGATTTTGATGAATCCCCTGACCATGAACATAAGCTAGGCCGAAAGggtagcagcacaaaggtgaaagaggatgaggtttctgtggagaggatgttccagcacatgttagtgccttcatggaggaaccaattgactgtgagagcctttgtggtcagctttgtactcagcatattgttcagtttcattgtgatgaagctcaacctcaccactggaattatcccttcactcaatgtctctgctggccttctagggttcttctttgtcaagacttggaccaagttcttggagaaatctggcatgttgaggcaacccttcacaaggcaagagaacactgtcatccaaacctgtgttgtggcctcctctggcatagcctttagtgGAGGGTTTGGAAGTTACCTCTTTGGAATGAGTGAAGAAATAGCCAACCAATCCACAGACACCAGTGACTTTAAGAACCCAAAATTAGGGTGGATAATAGGTTTTCTCTTTGTTGTTAGTTTTCTTGGCCTCTTCTCAGTTGTACCTCTACGAAAGATTATGGTCATTGATTTCAAATTGACATATCCAAGTGGTACTGCAACTGCACATCTCATCAACAGCTTCCACACTCCTCTAGGAGCCAAACTAGCAAAGAAGCAAGTGAAAACGTTGGGAAAATTCTTCAGCTTGAGCTTTTTATGGGGTTTCTTTCAATGGTTCTATACAGCTACTGACCAGTGTGGATTTCAAGCCTTCCCTTCATTGGGGCTTAAAGCATATGATAACAAGTTTTATTTTGATTTTTCTGCCATCTATGTTGGAGTGGGAATGATTTGCCCATATATCATAAATATATCAGTTCTTCTTGGAGGAATTATTTCTTGGGGAATAATGTGGCCTCTCATAAAAACCAAAGAGGGTCAATGGTATGAAAAGGGCCTTGGTGAAGGCAACCTTCACGGTATCCAAGGTTATAGGGTATTTATAGCCATTGCCTTGATCCTGGGTGATGGTTTGTATAACTTTGTTAAGGTGCTAACTCATACCCTTTGGGGGTTGTATCATCAAATCCGAGAAAAACAAAGGGAGAATGTTCTTCCTGTTGCAGATCAAGATTCCCCCACAAATCCTCAGCTATCTTATGATGACCAGCGCCGCACCCAACTCTTCCTTAAAGATCAAATTCCCACATGGTTTGCAATTGGAGGTTATGTTGCTGTTGCTGCCATCTCTACTGCCACTCTGCCACACATCTTCCACCAActaaaatggtattacataattgttatctacctaattgctcccaccttggcattttgcaatgcttatggttgcgggctaacagattggtccctcgcgtccacctatggaaagctagccatcttcacaattggagcctgggccggtgcatcacacggtggagttcttgccggcctagcagcatgtggagtgatgatgaacattgtttccacagcctcagacctgatgcaggatttcaagacaggctaccttacgctggcttcaccacgtgccatgtttgtgagccaaataattggcacaacaatgggttgtgtagtttctccttGTGTGTTTTGGATTTTCTACAAGGCTTTTCCTGATCTTGGGAGAAGCACAAGTGAATATCCTGCCCCATATGCAATCATATACCGTAATATGGCTATATTGGGGGTGCAAGGTTTTGGCTCTCTACCCAAAAACTGTCTCTTGCTTTGTTACATATTCTTCGGTTCTGCAGTCACGATAAACTTGATTAAAGATTTCCTCGGTAAGAGAGGGAGATTTGTACCGCTTCCAATGGCCATGGCGATACCTTTCTACATAGGGCCATACTTTGCCATTGACATGTGTGTTGGAAGTTTGATATTGTATGTCTGGGAAAGGATTAACAAGGAGAAGGCAGATGCTTTTGCACCAGCTGTGGCTTCTGGTTTGATTTGTGGGGATGGAATATGGACTCTTCCTGCTTCAATACTCGCTCTTGCCGGAGTTAAGCCACCAATTTGTATGAAGTTTTTGTCAAGAGCGGCAAATCAGAGGGTTGATACTTTATTAGGGAATTAA 2088 0.2864 MAQNGNGDNDFDESPDHEHKLGRKGSSTKVKEDEVSVERMFQHMLVPSWRNQLTVRAFVVSFVLSILFSFIVMKLNLTTGIIPSLNVSAGLLGFFFVKTWTKFLEKSGMLRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSEEIANQSTDTSDFKNPKLGWIIGFLFVVSFLGLFSVVPLRKIMVIDFKLTYPSGTATAHLINSFHTPLGAKLAKKQVKTLGKFFSLSFLWGFFQWFYTATDQCGFQAFPSLGLKAYDNKFYFDFSAIYVGVGMICPYIINISVLLGGIISWGIMWPLIKTKEGQWYEKGLGEGNLHGIQGYRVFIAIALILGDGLYNFVKVLTHTLWGLYHQIREKQRENVLPVADQDSPTNPQLSYDDQRRTQLFLKDQIPTWFAIGGYVAVAAISTATLPHIFHQLKWYYIIVIYLIAPTLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGASHGGVLAGLAACGVMMNIVSTASDLMQDFKTGYLTLASPRAMFVSQIIGTTMGCVVSPCVFWIFYKAFPDLGRSTSEYPAPYAIIYRNMAILGVQGFGSLPKNCLLLCYIFFGSAVTINLIKDFLGKRGRFVPLPMAMAIPFYIGPYFAIDMCVGSLILYVWERINKEKADAFAPAVASGLICGDGIWTLPASILALAGVKPPICMKFLSRAANQRVDTLLGN 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00407 695 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 50 668 IPR004813 GO:0035673
Cca08g00407 695 MobiDBLite consensus disorder prediction 10 31 - -
Cca08g00407 695 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 20 694 IPR045035 GO:0035673
Cca08g00407 695 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL8-RELATED 20 694 - -
Cca08g00407 695 MobiDBLite consensus disorder prediction 1 31 - -
Cca08g00407 695 Pfam OPT oligopeptide transporter protein 52 667 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00407 Cca-Chr8 6169897 6175527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g00407 6 534 Organic Solute Cotransporters AT1G09930 22.074 1.35e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00407 - - gmx:100814953 1293.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00407 08 6169897 6175527 Cca08g00407 08 6169897 6175527 ECH